CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68825
CDX74700
CDX75227
CDX81487
CDX81488
CDX81489
CDY17034
CDY18962
CDY23649
CDY27400
CDY37020
CDY47592
CDY61790
CDY61791
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	CDY17034	AT1G47260.1	21798944
AT5G09450.1	CDY23649	AT1G47260.1	21798944
AT5G09450.1	CDY47592	AT1G47260.1	21798944
AT5G09450.1	CDY67628	AT1G47260.1	21798944
AT5G09450.1	CDX74700	AT2G44950.1	21798944
AT5G09450.1	CDY18962	AT2G44950.1	21798944
AT5G09450.1	CDY27400	AT2G44950.1	21798944
AT5G09450.1	CDY37020	AT2G44950.1	21798944
AT5G09450.1	CDX68825	AT4G32190.1	21798944
AT5G09450.1	CDX75227	AT4G32190.1	21798944
AT5G09450.1	CDX81487	AT4G32190.1	21798944
AT5G09450.1	CDX81488	AT4G32190.1	21798944
AT5G09450.1	CDX81489	AT4G32190.1	21798944
AT5G09450.1	CDY61790	AT4G32190.1	21798944
AT5G09450.1	CDY61791	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028632.1-P	Field mustard	mitochondrion	94.31	94.31
AT5G09450.1	Thale cress	mitochondrion	83.91	82.89
KRH43872	Soybean	mitochondrion	56.68	57.97
KRH10583	Soybean	mitochondrion	56.93	57.64
Solyc10g047370.1.1	Tomato	mitochondrion	54.21	54.89
PGSC0003DMT400011461	Potato	mitochondrion	54.21	54.75
VIT_11s0078g00180.t01	Wine grape	cytosol	25.0	52.88
Os04t0450200-01	Rice	cytosol	35.4	48.97
EES10908	Sorghum	mitochondrion	47.77	46.51
Zm00001d003500_P001	Maize	mitochondrion	48.27	46.1
TraesCS2A01G318100.1	Wheat	mitochondrion	46.78	45.11
TraesCS2B01G336200.1	Wheat	mitochondrion	46.78	45.11
GSMUA_Achr10P...	Banana	cytosol	48.76	44.67
TraesCS2D01G315700.1	Wheat	mitochondrion	47.28	43.31
HORVU2Hr1G079080.2	Barley	cytosol	28.71	42.18
HORVU3Hr1G070650.1	Barley	cytosol	14.85	41.38
HORVU1Hr1G085940.2	Barley	cytosol	15.59	37.06
CDY24553	Canola	mitochondrion	22.52	31.6
CDY50357	Canola	mitochondrion	15.59	31.5
CDY35212	Canola	mitochondrion	19.31	27.76
CDY27645	Canola	mitochondrion	16.83	26.25
CDY00734	Canola	mitochondrion	11.39	25.99
CDY65573	Canola	mitochondrion	23.51	25.68
CDX91277	Canola	mitochondrion	31.93	24.86
CDX97288	Canola	mitochondrion	31.44	24.71
CDY71968	Canola	plastid	16.83	23.29
CDX96239	Canola	mitochondrion	27.23	22.4
CDY46999	Canola	mitochondrion	26.73	22.0
CDX99984	Canola	mitochondrion	25.99	21.97
CDY34141	Canola	mitochondrion	26.73	21.95
CDX98698	Canola	mitochondrion	26.24	21.72
CDY19721	Canola	mitochondrion	25.25	21.38
CDY03299	Canola	mitochondrion	24.26	20.72
CDY39781	Canola	mitochondrion	24.5	20.71
CDY15126	Canola	cytosol, mitochondrion, plastid	25.99	20.51
CDY25035	Canola	mitochondrion, plastid	24.75	20.41
CDX90079	Canola	mitochondrion	25.74	20.31
CDY15237	Canola	mitochondrion	25.0	19.69
CDY05574	Canola	mitochondrion	25.25	19.47
CDY27647	Canola	mitochondrion	19.55	19.41
CDX91822	Canola	mitochondrion	23.76	19.2
CDX90962	Canola	mitochondrion	23.76	19.16
CDX89976	Canola	mitochondrion	24.26	19.03
CDY48421	Canola	mitochondrion	19.06	18.64
CDY35213	Canola	cytosol	1.73	17.07
CDY31943	Canola	plastid	20.05	16.7
CDY05786	Canola	plastid	19.8	16.49
CDY09903	Canola	mitochondrion	19.8	15.09
CDY36566	Canola	mitochondrion	22.28	14.97
CDY06272	Canola	mitochondrion	19.55	14.91
CDY57695	Canola	mitochondrion	21.78	14.59
CDY39654	Canola	mitochondrion	21.53	14.48
CDY53325	Canola	mitochondrion	25.0	14.47
CDX94049	Canola	cytosol	25.0	14.39
CDX73880	Canola	mitochondrion	16.58	13.37
CDY53324	Canola	mitochondrion, plastid	23.76	13.13
CDX97686	Canola	plastid	20.05	13.06
CDY30088	Canola	plastid	19.55	12.8
CDY50358	Canola	cytosol	6.93	11.91
CDY66759	Canola	cytosol	21.53	11.65
CDX79395	Canola	cytosol	21.04	8.29
CDY24554	Canola	cytosol	1.73	4.58
CDY36565	Canola	cytosol	0.74	0.9

Protein Annotations

EnsemblPlants:CDY44801	EnsemblPlantsGene:GSBRNA2T00080809001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY44801	ProteinID:CDY44801.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EDD28E	UniProt:A0A078I4J8	MapMan:35.1	:	:	:

Description

BnaC02g00860DBnaC02g00860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4J8]

Coordinates

chrLK032601:+:195660..197364

Molecular Weight (calculated)

46074.7 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.432

Length

404 amino acids

Sequence
(BLAST)

001: MATRSIFHTI RGRLTVGTNL TRNAESSRFS KPYSADAATG GSLVEEPEEK DDLRSRIFRL RLPKRSATTV LEKWVGEGNQ ITVNELREIS KELRRTRRYK
101: HALEVTEYLV QHEESNISDA DYASRIDLIS KVFGIDAAER YFEGLQPPSK TPETYTSLLH AYAASKQTER AEALFKIIIE SESLTFGAIT YNEMMTLYMS
201: VGEVEKVRDV IKVMKRRNVS PDIFTYNLWL SSCAATFDVD ELRKILEEMR RGGGSNEGWA RYIDLTSIYI NSSRLTNAES RSPVESEKSI SQREWVTYDF
301: LMILHTGLGN KGMVDQIWKS LRNTNQKLSS RSYICVVSSY LMLGCLREAG EVVDQWKESK TTEFDGSACL RILNAFRDVG LEEKASDFQL LLVEKKCSLE
401: DEVS

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.