CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67589
CDX69130
CDX69732
CDX69943
CDX70421
CDX70854
CDX70995
CDX71590
CDX73507
CDX73935
CDX75494
CDX76571
CDX78209
CDX78444
CDX78977
CDX79882
CDX80126
CDX81033
CDX81109
CDX81305
CDX83758
CDX84783
CDX87415
CDX87559
CDX88498
CDX88803
CDX88908
CDX89402
CDX89404
CDX90471
CDX90521
CDX90931
CDX90955
CDX91807
CDX92368
CDX93520
CDX94426
CDX94429
CDX95000
CDX96158
CDX96658
CDX97144
CDY00662
CDY02597
CDY03308
CDY05862
CDY07095
CDY08089
CDY08442
CDY08730
CDY09128
CDY09393
CDY09624
CDY09691
CDY10807
CDY10808
CDY15390
CDY17034
CDY17445
CDY17618
CDY18012
CDY18667
CDY19085
CDY21546
CDY22027
CDY22155
CDY23465
CDY23649
CDY23940
CDY24145
CDY25241
CDY27044
CDY27921
CDY27992
CDY28737
CDY29419
CDY31105
CDY31451
CDY31970
CDY32159
CDY32249
CDY34488
CDY35676
CDY35988
CDY36505
CDY36712
CDY36916
CDY37756
CDY39368
CDY39772
CDY42139
CDY43151
CDY45488
CDY45521
CDY45523
CDY45537
CDY47188
CDY47592
CDY49161
CDY49480
CDY49923
CDY50398
CDY51584
CDY51827
CDY53012
CDY53496
CDY54560
CDY56161
CDY57950
CDY58876
CDY60236
CDY61439
CDY62425
CDY65733
CDY66007
CDY66585
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47260.1	CDX93520	AT1G09180.1	21798944
AT1G47260.1	CDX95000	AT1G09180.1	21798944
AT1G47260.1	CDY31105	AT1G09180.1	21798944
AT1G47260.1	CDY32159	AT1G09180.1	21798944
AT1G47260.1	CDX83758	AT1G19580.1	15821992
AT1G47260.1	CDX96658	AT1G19580.1	15821992
AT1G47260.1	CDY29419	AT1G19580.1	15821992
AT1G47260.1	CDY39368	AT1G19580.1	15821992
AT1G47260.1	CDY17034	AT1G47260.1	15821992
AT1G47260.1	CDY23649	AT1G47260.1	15821992
AT1G47260.1	CDY47592	AT1G47260.1	15821992
AT1G47260.1	CDY67628	AT1G47260.1	15821992
AT1G47260.1	CDY17034	AT1G47260.1	19808034
AT1G47260.1	CDY23649	AT1G47260.1	19808034
AT1G47260.1	CDY47592	AT1G47260.1	19808034
AT1G47260.1	CDY67628	AT1G47260.1	19808034
AT1G47260.1	CDX87415	AT1G79010.1	12837548
AT1G47260.1	CDX88498	AT1G79010.1	12837548
AT1G47260.1	CDY57950	AT1G79010.1	12837548
AT1G47260.1	CDY09393	AT2G02050.1	12837548
AT1G47260.1	CDY17445	AT2G02050.1	12837548
AT1G47260.1	CDY17618	AT2G02050.1	12837548
AT1G47260.1	CDY03308	AT2G20360.1	12837548
AT1G47260.1	CDY31970	AT2G20360.1	12837548
AT1G47260.1	CDY39772	AT2G20360.1	12837548
AT1G47260.1	CDX84783	AT2G31490.1	12837548
AT1G47260.1	CDY10807	AT2G31490.1	12837548
AT1G47260.1	CDY10808	AT2G31490.1	12837548
AT1G47260.1	CDY15390	AT2G31490.1	12837548
AT1G47260.1	CDY19085	AT2G31490.1	12837548
AT1G47260.1	CDY23940	AT2G31490.1	12837548
AT1G47260.1	CDY34488	AT2G31490.1	12837548
AT1G47260.1	CDY53496	AT2G42310.1	12837548
AT1G47260.1	CDX80126	AT2G47690.1	12837548
AT1G47260.1	CDY53012	AT2G47690.1	12837548
AT1G47260.1	CDY23465	AT3G03100.1	12837548
AT1G47260.1	CDY28737	AT3G03100.1	12837548
AT1G47260.1	CDY43151	AT3G03100.1	12837548
AT1G47260.1	CDY49923	AT3G03100.1	12837548
AT1G47260.1	CDX73935	AT3G08610.1	12837548
AT1G47260.1	CDY00662	AT3G08610.1	12837548
AT1G47260.1	CDY22155	AT3G08610.1	12837548
AT1G47260.1	CDY27992	AT3G08610.1	12837548
AT1G47260.1	CDY35988	AT3G08610.1	12837548
AT1G47260.1	CDY66585	AT3G08610.1	12837548
AT1G47260.1	CDY08442	AT3G12260.1	12837548
AT1G47260.1	CDY42139	AT3G12260.1	12837548
AT1G47260.1	CDY24145	AT3G47930.1	12837548
AT1G47260.1	CDY36916	AT3G47930.1	12837548
AT1G47260.1	CDY05862	AT3G48680.1	12837548
AT1G47260.1	CDY08089	AT3G48680.1	12837548
AT1G47260.1	CDY05862	AT3G48680.1	15821992
AT1G47260.1	CDY08089	AT3G48680.1	15821992
AT1G47260.1	CDY05862	AT3G48680.1	21798944
AT1G47260.1	CDY08089	AT3G48680.1	21798944
AT1G47260.1	CDX67589	AT3G54120.1	21798944
AT1G47260.1	CDX73507	AT3G54120.1	21798944
AT1G47260.1	CDX78209	AT3G54120.1	21798944
AT1G47260.1	CDY51584	AT3G54120.1	21798944
AT1G47260.1	CDX79882	AT3G57785.1	12837548
AT1G47260.1	CDX90955	AT4G02080.1	21798944
AT1G47260.1	CDX91807	AT4G02080.1	21798944
AT1G47260.1	CDY07095	AT4G02080.1	21798944
AT1G47260.1	CDY22027	AT4G02080.1	21798944
AT1G47260.1	CDX90931	AT4G02580.1	12837548
AT1G47260.1	CDY18012	AT4G02580.1	12837548
AT1G47260.1	CDX90521	AT4G16450.1	12837548
AT1G47260.1	CDY09691	AT4G16450.1	12837548
AT1G47260.1	CDY32249	AT4G16450.1	12837548
AT1G47260.1	CDY62425	AT4G16450.1	12837548
AT1G47260.1	CDX76571	AT4G17486.1	21798944
AT1G47260.1	CDX90471	AT4G17486.1	21798944
AT1G47260.1	CDY09624	AT4G17486.1	21798944
AT1G47260.1	CDY27921	AT4G17486.1	21798944
AT1G47260.1	CDX78977	AT4G20150.1	12837548
AT1G47260.1	CDY31451	AT4G20150.1	12837548
AT1G47260.1	CDY54560	AT4G20150.1	12837548
AT1G47260.1	CDX89402	AT4G25660.1	21798944
AT1G47260.1	CDX89404	AT4G25660.1	21798944
AT1G47260.1	CDX94426	AT4G25660.1	21798944
AT1G47260.1	CDX94429	AT4G25660.1	21798944
AT1G47260.1	CDY49480	AT4G25660.1	21798944
AT1G47260.1	CDY66007	AT4G25660.1	21798944
AT1G47260.1	CDX89402	AT4G25680.1	21798944
AT1G47260.1	CDX89404	AT4G25680.1	21798944
AT1G47260.1	CDX94426	AT4G25680.1	21798944
AT1G47260.1	CDX94429	AT4G25680.1	21798944
AT1G47260.1	CDY49480	AT4G25680.1	21798944
AT1G47260.1	CDY66007	AT4G25680.1	21798944
AT1G47260.1	CDX69130	AT4G35320.1	15821992
AT1G47260.1	CDX75494	AT4G35320.1	15821992
AT1G47260.1	CDX81033	AT5G07110.1	21798944
AT1G47260.1	CDY58876	AT5G07110.1	21798944
AT1G47260.1	CDX69943	AT5G08530.1	12837548
AT1G47260.1	CDX81109	AT5G08530.1	12837548
AT1G47260.1	CDY21546	AT5G08530.1	12837548
AT1G47260.1	CDY60236	AT5G08530.1	12837548
AT1G47260.1	CDX69732	AT5G11770.1	12837548
AT1G47260.1	CDX70421	AT5G11770.1	12837548
AT1G47260.1	CDX78444	AT5G11770.1	12837548
AT1G47260.1	CDX97144	AT5G11770.1	12837548
AT1G47260.1	CDY61439	AT5G11770.1	12837548
AT1G47260.1	CDX70854	AT5G18910.1	21798944
AT1G47260.1	CDX88908	AT5G18910.1	21798944
AT1G47260.1	CDY02597	AT5G18910.1	21798944
AT1G47260.1	CDY47188	AT5G18910.1	21798944
AT1G47260.1	CDX70995	AT5G22290.1	21798944
AT1G47260.1	CDX88803	AT5G22290.1	21798944
AT1G47260.1	CDX92368	AT5G22290.1	21798944
AT1G47260.1	CDY09128	AT5G22290.1	21798944
AT1G47260.1	CDY35676	AT5G22290.1	21798944
AT1G47260.1	CDX71590	AT5G50100.1	21798944
AT1G47260.1	CDY37756	AT5G50100.1	21798944
AT1G47260.1	CDX96158	AT5G52840.1	12837548
AT1G47260.1	CDY27044	AT5G52840.1	12837548
AT1G47260.1	CDY49161	AT5G52840.1	12837548
AT1G47260.1	CDY50398	AT5G52840.1	12837548
AT1G47260.1	CDY51827	AT5G52840.1	12837548
AT1G47260.1	CDY56161	AT5G52840.1	12837548
AT1G47260.1	CDX81305	AT5G67590.1	12837548
AT1G47260.1	CDX87559	AT5G67590.1	12837548
AT1G47260.1	CDY08730	AT5G67590.1	12837548
AT1G47260.1	CDY18667	AT5G67590.1	12837548
AT1G47260.1	CDY36505	AT5G67590.1	12837548
AT1G47260.1	CDY45537	ATMG00070.1	12837548
AT1G47260.1	CDY65733	ATMG00510.1	12837548
AT1G47260.1	CDY45521	ATMG00513.1	12837548
AT1G47260.1	CDY45523	ATMG00516.1	12837548
AT1G47260.1	CDY25241	ATMG01120.1	12837548
AT1G47260.1	CDY36712	ATMG01275.1	12837548
AT1G47260.1	CDY45488	ATMG01275.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23649	Canola	mitochondrion	98.91	98.56
CDY47592	Canola	mitochondrion	96.01	96.01
CDY17034	Canola	mitochondrion	95.65	95.65
AT1G47260.1	Thale cress	mitochondrion	88.77	88.13
CDY59959	Canola	mitochondrion	19.2	74.65
CDX83758	Canola	mitochondrion, plastid	72.1	73.98
CDX96658	Canola	mitochondrion	72.1	73.98
CDY50984	Canola	mitochondrion	60.51	64.23
CDY55089	Canola	mitochondrion	59.78	63.95
CDY30772	Canola	mitochondrion	59.06	63.42
CDY45234	Canola	mitochondrion	57.97	63.24
CDY29419	Canola	cytosol	35.87	53.8
CDY39368	Canola	mitochondrion	38.04	43.21
CDY05862	Canola	mitochondrion	19.2	20.95
CDY08089	Canola	mitochondrion	19.2	20.7
CDY31369	Canola	mitochondrion	18.84	20.63
CDX84424	Canola	mitochondrion	18.84	20.63
CDY68990	Canola	mitochondrion	18.84	20.63
CDY39864	Canola	mitochondrion	18.84	20.47
CDY16720	Canola	mitochondrion	18.48	20.24
CDY66238	Canola	mitochondrion	18.84	18.84

Protein Annotations

EnsemblPlants:CDY67628	EnsemblPlantsGene:GSBRNA2T00065231001	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061
PANTHER:PTHR13061:SF23	PFAM:PF00132	ProteinID:CDY67628	ProteinID:CDY67628.1	SUPFAM:SSF51161	UniParc:UPI0004EEC129
UniProt:A0A078JJ77	MapMan:2.4.1.4.6	:	:	:	:

Description

BnaCnng55730DBnaCnng55730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJ77]

Coordinates

chrLK036331:+:3843..7869

Molecular Weight (calculated)

29898.6 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.182

Length

276 amino acids

Sequence
(BLAST)

001: MGTLGRAIYT VGKWIRGSGQ ALDRVGSLLQ GSHRFEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNSLVHVAK TNLGGKVLPT TIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVETH AMVAAGSIVK ENTRIPSGEV WGGNPAKFMR KLTDEEIAYI
201: SKSAENYINL AHIHAAENSK SFDEIEVERA LRKKYARKDE DYDSMLGIVR ETPAELILPD NVLPEKTTTR VPTTHY

Best Arabidopsis Sequence Match ( AT1G47260.1 )
(BLAST)

001: MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNTLVHVAK TNISGKVLPT LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV WGGNPAKFMR KLTDEEIVYI
201: SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF

Arabidopsis Description

GAMMACA2GAMMA CA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.