CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16720	Canola	mitochondrion	88.77	97.22
CDY68990	Canola	mitochondrion	87.32	95.63
CDX84424	Canola	mitochondrion	86.96	95.24
CDY31369	Canola	mitochondrion	84.78	92.86
CDY39864	Canola	mitochondrion	85.14	92.52
CDY05862	Canola	mitochondrion	83.7	91.3
CDY08089	Canola	mitochondrion	82.97	89.45
Bra035840.1-P	Field mustard	mitochondrion	81.88	86.59
AT5G63510.2	Thale cress	mitochondrion	80.43	79.57
KRH59820	Soybean	mitochondrion	68.84	75.1
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	68.12	74.31
VIT_17s0000g01240.t01	Wine grape	mitochondrion	65.58	73.88
GSMUA_Achr2P06160_001	Banana	mitochondrion	67.39	73.52
Solyc03g019720.2.1	Tomato	plastid	65.94	72.22
PGSC0003DMT400039315	Potato	mitochondrion	65.94	72.22
Os02t0508000-01	Rice	mitochondrion	67.39	72.09
GSMUA_Achr6P27510_001	Banana	mitochondrion	64.86	71.31
TraesCS6A01G188800.2	Wheat	golgi	65.22	70.31
TraesCS6B01G215700.2	Wheat	mitochondrion	65.22	70.31
TraesCS6D01G177500.2	Wheat	mitochondrion	65.22	70.31
HORVU6Hr1G044700.2	Barley	mitochondrion	65.58	69.88
EES06863	Sorghum	mitochondrion	66.3	69.85
Zm00001d016566_P001	Maize	mitochondrion	64.86	60.47
CDY50984	Canola	mitochondrion	21.74	23.08
CDY55089	Canola	mitochondrion	21.38	22.87
CDY45234	Canola	mitochondrion	19.93	21.74
CDY30772	Canola	mitochondrion	19.93	21.4
CDX96658	Canola	mitochondrion	19.57	20.07
CDX83758	Canola	mitochondrion, plastid	19.57	20.07
CDY47592	Canola	mitochondrion	19.2	19.2
CDY17034	Canola	mitochondrion	19.2	19.2
CDY67628	Canola	mitochondrion	18.84	18.84
CDY23649	Canola	mitochondrion	18.84	18.77
CDY29419	Canola	cytosol	10.14	15.22
CDY39368	Canola	mitochondrion	10.14	11.52
CDY59959	Canola	mitochondrion	2.17	8.45

Protein Annotations

EnsemblPlants:CDY66238	EnsemblPlantsGene:GSBRNA2T00052350001	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF22
ProteinID:CDY66238	ProteinID:CDY66238.1	SUPFAM:SSF51161	UniParc:UPI0004EEB304	UniProt:A0A078JF73	MapMan:35.1

Description

BnaCnng50110DBnaCnng50110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JF73]

Coordinates

chrLK035157:+:8057..9654

Molecular Weight (calculated)

30301.5 Da

IEP (calculated)

7.805

GRAVY (calculated)

0.075

Length

276 amino acids

Sequence
(BLAST)

001: MATSIARFSR RGVASSLIRR CFAAEAALAT HTDPPKPKLT VSPSPSPDRV KWDYRGQRQI IPLGQWLPKV AVDAYVAPNA VLAGQVTVWD GSSVWNGAVL
101: RGDLNKITLG FCSNVQERCV VHAAWSSPTG WDFSGLDSLR LCMVIVYFEF TGLPAETLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL
201: EAGSVVPPGR RIPSGELWGG NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST VYLEVEKFKR SLGITV

Best Arabidopsis Sequence Match ( AT5G63510.2 )
(BLAST)

001: MATSIARLSR RGVTSNLIRR CFAAEAALAR KTELPKPQFT VSPSTDRVKW DYRGQRQIIP LGQWLPKVAV DAYVAPNVVL AGQVTVWDGS SVWNGAVLRG
101: DLNKITVGFC SNVQERCVVH AAWSSPTVGC NGDKAVSHGC ELVFAPRFRQ GKFSRLPAAT IIDRYVTVGA YSLLRSCTIE PECIIGQHSI LMEGSLVETR
201: SILEAGSVVP PGRRIPSGEL WGGNPARFIR TLTNEETLEI PKLAVAINHL SGDYFSEFLP YSTVYLEVEK FKKSLGIAV

Arabidopsis Description

GAMMA CAL1Gamma carbonic anhydrase like 1 [Source:UniProtKB/TrEMBL;Acc:F4KAQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.