Factsheet for PGSC0003DMT400039315

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g019720.2.1	Tomato	plastid	93.65	93.65
VIT_17s0000g01240.t01	Wine grape	mitochondrion	76.19	78.37
GSMUA_Achr2P06160_001	Banana	mitochondrion	76.19	75.89
Bra038640.1-P	Field mustard	mitochondrion	73.81	73.81
CDY16720	Canola	mitochondrion	73.81	73.81
GSMUA_Achr6P27510_001	Banana	mitochondrion	73.41	73.71
CDY68990	Canola	mitochondrion	73.02	73.02
KRH59820	Soybean	mitochondrion	73.02	72.73
CDX84424	Canola	mitochondrion	72.22	72.22
CDY05862	Canola	mitochondrion	72.22	71.94
Bra029221.1-P	Field mustard	mitochondrion	71.83	71.83
CDY31369	Canola	mitochondrion	71.83	71.83
Os02t0508000-01	Rice	mitochondrion	73.41	71.71
AT3G48680.1	Thale cress	mitochondrion	72.62	71.48
CDY39864	Canola	mitochondrion	71.83	71.26
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	71.43	71.15
Bra018042.1-P	Field mustard	mitochondrion	72.22	71.09
CDY08089	Canola	mitochondrion	71.83	70.7
TraesCS6B01G215700.2	Wheat	mitochondrion	71.03	69.92
TraesCS6A01G188800.2	Wheat	golgi	71.03	69.92
EES06863	Sorghum	mitochondrion	72.62	69.85
TraesCS6D01G177500.2	Wheat	mitochondrion	70.63	69.53
HORVU6Hr1G044700.2	Barley	mitochondrion	71.43	69.5
Bra035840.1-P	Field mustard	mitochondrion	71.83	69.35
CDY66238	Canola	mitochondrion	72.22	65.94
AT5G63510.2	Thale cress	mitochondrion	71.83	64.87
Zm00001d016566_P001	Maize	mitochondrion	72.22	61.49
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	23.41	22.01
PGSC0003DMT400009474	Potato	mitochondrion	21.83	20.15
PGSC0003DMT400009047	Potato	mitochondrion	20.24	18.89

Protein Annotations

EnsemblPlants:PGSC0003DMT400039315	EnsemblPlantsGene:PGSC0003DMG402015205	EntrezGene:102599718	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061
PANTHER:PTHR13061:SF22	PGSC:PGSC0003DMG402015205	RefSeq:XP_006351516.1	SUPFAM:SSF51161	UniParc:UPI000294A758	UniProt:M1B839
MapMan:2.4.1.4.7	:	:	:	:	:

Description

Protein yrdA [Source:PGSC_GENE;Acc:PGSC0003DMG402015205]

Coordinates

chr3:-:50349187..50355703

Molecular Weight (calculated)

27612.3 Da

IEP (calculated)

8.381

GRAVY (calculated)

-0.017

Length

252 amino acids

Sequence
(BLAST)

001: MATLGRLSRR VIATTLSGHL RHHQSHNLIR RTLATEAQAA INESPDRVKW DYRGQRRIIP LGQWAPKIAV DAYVAPNVVL AGQVTVCDSA SVWNGAVLRG
101: DLNKITVGFC SSIQEKCVVH AAWSSPTGLP AETVVDRYVT VGAYCLLRSC TIEPECIIGQ HSILMEGSLV ETNSILEAGS VLPPGRRIPT GELWAGNPAR
201: FVRTLTHEEI KEIPKLSTAI NDLANAHHSE FLPYSTVYLE VEKLKKSFGI SI

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.