Factsheet for PGSC0003DMT400009047

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085040.2.1	Tomato	extracellular	99.63	99.63
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	85.93	86.57
KRH76755	Soybean	mitochondrion	76.3	76.3
KRH28712	Soybean	mitochondrion	75.56	75.56
EES00597	Sorghum	mitochondrion	73.33	75.29
TraesCS7D01G101600.1	Wheat	cytosol	72.96	75.19
TraesCS3D01G199500.1	Wheat	cytosol	72.59	74.81
HORVU7Hr1G022550.1	Barley	cytosol	72.59	74.52
Zm00001d040515_P001	Maize	mitochondrion	72.22	74.43
TraesCS7A01G107200.1	Wheat	cytosol	72.22	74.43
TraesCS3B01G224000.1	Wheat	mitochondrion	72.22	74.43
TraesCS3A01G193500.1	Wheat	cytosol	72.22	74.43
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	9.63	74.29
TraesCS7B01G005800.1	Wheat	cytosol	71.85	74.05
Os01t0283100-01	Rice	mitochondrion	71.85	73.76
PGSC0003DMT400009474	Potato	mitochondrion	72.96	72.16
Bra012077.1-P	Field mustard	mitochondrion	67.04	71.54
Zm00001d008215_P002	Maize	mitochondrion	72.59	71.27
VIT_04s0023g02060.t01	Wine grape	cytosol	59.63	70.61
TraesCS2B01G169200.1	Wheat	golgi	71.48	70.44
Os12t0169700-01	Rice	mitochondrion	71.11	70.33
HORVU3Hr1G045700.1	Barley	cytosol	45.19	70.11
HORVU3Hr1G045750.1	Barley	cytosol	45.19	70.11
AT5G66510.2	Thale cress	mitochondrion	69.26	69.52
TraesCS2D01G148200.1	Wheat	mitochondrion	70.0	68.98
TraesCS2A01G144200.1	Wheat	mitochondrion	70.0	68.98
EER99796	Sorghum	mitochondrion	69.63	68.86
Os07t0642900-01	Rice	nucleus	69.26	68.5
Zm00001d022324_P001	Maize	mitochondrion	69.26	68.5
HORVU2Hr1G025530.2	Barley	plastid	66.3	58.5
HORVU3Hr1G045680.1	Barley	cytosol, plastid	68.89	57.23
CDY59959	Canola	mitochondrion	14.07	53.52
PGSC0003DMT400039315	Potato	mitochondrion	18.89	20.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400009047	EnsemblPlantsGene:PGSC0003DMG400003515	EntrezGene:102586209	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf
PANTHER:PTHR13061	PANTHER:PTHR13061:SF9	PFAM:PF00132	PGSC:PGSC0003DMG400003515	RefSeq:XP_006340643.1	SEG:seg
SUPFAM:SSF51161	UniParc:UPI000294DA87	UniProt:M0ZVI4	MapMan:2.4.1.4.6	:	:

Description

Protein yrdA [Source:PGSC_GENE;Acc:PGSC0003DMG400003515]

Coordinates

chr2:-:40306683..40312497

Molecular Weight (calculated)

29234.0 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.104

Length

270 amino acids

Sequence
(BLAST)

001: MGSAMKAIYT VGFWIRETGQ ALDRLGCRLQ GNYYFQEHLS RHRTLMNLFD KVPVVEKDAF VAPSASIIGD VHIGRSASIW YGCVLRGDVN SVSIGAGTNV
101: QDNSLIHVAK SNISGKVLPT IIGKNVTIGH SAVLHGCTVE DEAFIGMGAT VLDGAVVEKN AMVAAGAHVR QNTRIPFGEV WGGNPARFLR KLTEEEIAFI
201: SESAANYSNL AQVHAAENAK ELDKIEFEKV LRKKLARKDE EYDSMLGVGE TPPELVLPDS SLPDKAPKAS

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.