Factsheet for PGSC0003DMT400009474

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080570.2.1	Tomato	plastid	98.53	98.53
KRH61146	Soybean	cytosol	80.95	80.07
VIT_18s0001g12730.t01	Wine grape	cytosol	79.12	79.41
KRH51833	Soybean	mitochondrion	79.12	79.12
KRH61144	Soybean	cytosol	62.27	77.98
Os12t0169700-01	Rice	mitochondrion	77.66	77.66
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	75.82	77.24
EER99796	Sorghum	mitochondrion	76.56	76.56
TraesCS2D01G148200.1	Wheat	mitochondrion	76.19	75.91
TraesCS2A01G144200.1	Wheat	mitochondrion	76.19	75.91
Zm00001d022324_P001	Maize	mitochondrion	75.82	75.82
GSMUA_Achr3P09240_001	Banana	mitochondrion	35.9	75.38
AT1G19580.1	Thale cress	mitochondrion	75.46	74.91
GSMUA_Achr3P09250_001	Banana	cytosol	41.76	74.51
TraesCS2B01G169200.1	Wheat	golgi	74.73	74.45
GSMUA_AchrUn_...	Banana	mitochondrion	35.16	73.85
Os07t0642900-01	Rice	nucleus	73.63	73.63
PGSC0003DMT400009047	Potato	mitochondrion	72.16	72.96
Bra016502.1-P	Field mustard	mitochondrion	71.79	72.86
CDX83758	Canola	mitochondrion, plastid	71.79	72.86
CDX96658	Canola	mitochondrion	71.79	72.86
EES00597	Sorghum	mitochondrion	68.86	71.48
TraesCS3D01G199500.1	Wheat	cytosol	67.4	70.23
HORVU7Hr1G022550.1	Barley	cytosol	67.03	69.58
Zm00001d040515_P001	Maize	mitochondrion	66.67	69.47
TraesCS7D01G101600.1	Wheat	cytosol	66.67	69.47
TraesCS3B01G224000.1	Wheat	mitochondrion	66.67	69.47
TraesCS3A01G193500.1	Wheat	cytosol	66.67	69.47
TraesCS7A01G107200.1	Wheat	cytosol	66.3	69.08
TraesCS7B01G005800.1	Wheat	cytosol	65.93	68.7
Os01t0283100-01	Rice	mitochondrion	65.93	68.44
HORVU3Hr1G045700.1	Barley	cytosol	43.59	68.39
HORVU3Hr1G045750.1	Barley	cytosol	43.59	68.39
Zm00001d008215_P002	Maize	mitochondrion	67.77	67.27
HORVU2Hr1G025530.2	Barley	plastid	70.33	62.75
HORVU3Hr1G045680.1	Barley	cytosol, plastid	63.74	53.54
CDY29419	Canola	cytosol	35.9	53.26
Bra025750.1-P	Field mustard	cytosol	34.43	52.81
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	5.86	45.71
CDY39368	Canola	mitochondrion	37.73	42.39
PGSC0003DMT400039315	Potato	mitochondrion	20.15	21.83

Protein Annotations

EntrezGene:102597275	Gene3D:2.160.10.10	MapMan:2.4.1.4.6	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005747	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009791	GO:GO:0009901	GO:GO:0009908
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0031966	GO:GO:0042802	GO:GO:0045271
GO:GO:0070207	GO:GO:2000377	InterPro:Hexapep	UniProt:M0ZWB1	PFAM:PF00132	EnsemblPlantsGene:PGSC0003DMG400003692
PGSC:PGSC0003DMG400003692	EnsemblPlants:PGSC0003DMT400009474	PANTHER:PTHR13061	PANTHER:PTHR13061:SF23	SUPFAM:SSF51161	InterPro:Trimer_LpxA-like_sf
UniParc:UPI0002959DD2	RefSeq:XP_006341958.1	:	:	:	:

Description

Protein yrdA [Source:PGSC_GENE;Acc:PGSC0003DMG400003692]

Coordinates

chr4:+:69961107..69966740

Molecular Weight (calculated)

29525.4 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.113

Length

273 amino acids

Sequence
(BLAST)

001: MGTLGKAIYS LGSIVRATGK ALDRVGNRLQ GSSHIEEHLS RHRTLMNIFD KAPVVDKDVF VAPGATVIGD VHVGRNSSIW YGCVLRGDVN SISVGSGTNI
101: QDNSLVHVAK SNISQKVLPT IIGNNVTVGH SAVVHGCTIE DEAFIGMGAT LLDGVHVEKH AMVAAGSLVK QNTRIPSGEV WAGNPAKFLR KLTDEEIAFI
201: AQSATNYCNL ARVHAAENSK SFDEIEFEKM LRKKYAKRDE EYDSMIGVVR ETPPELVLPD NILPEKAAKS IVQ

Best Arabidopsis Sequence Match ( AT1G47260.1 )
(BLAST)

001: MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNTLVHVAK TNISGKVLPT LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV WGGNPAKFMR KLTDEEIVYI
201: SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF

Arabidopsis Description

GAMMACA2GAMMA CA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.