Factsheet for Bra016502.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014069.1-P
Bra032216.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19580.1	Bra014069.1-P	AT1G47260.1	15821992
AT1G19580.1	Bra032216.1-P	AT1G47260.1	15821992

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96658	Canola	mitochondrion	99.63	99.63
CDX83758	Canola	mitochondrion, plastid	99.26	99.26
AT1G19580.1	Thale cress	mitochondrion	88.48	86.55
GSMUA_Achr3P09240_001	Banana	mitochondrion	41.26	85.38
GSMUA_AchrUn_...	Banana	mitochondrion	40.15	83.08
VIT_18s0001g12730.t01	Wine grape	cytosol	80.3	79.41
TraesCS7D01G101600.1	Wheat	cytosol	75.84	77.86
TraesCS3A01G193500.1	Wheat	cytosol	75.46	77.48
TraesCS3B01G224000.1	Wheat	mitochondrion	75.46	77.48
TraesCS3D01G199500.1	Wheat	cytosol	75.46	77.48
TraesCS7A01G107200.1	Wheat	cytosol	75.46	77.48
HORVU7Hr1G022550.1	Barley	cytosol	75.46	77.19
TraesCS7B01G005800.1	Wheat	cytosol	75.09	77.1
EES00597	Sorghum	mitochondrion	75.09	76.81
KRH61146	Soybean	cytosol	78.07	76.09
Os01t0283100-01	Rice	mitochondrion	74.35	76.05
Zm00001d040515_P001	Maize	mitochondrion	73.23	75.19
KRH51833	Soybean	mitochondrion	75.46	74.36
Zm00001d008215_P002	Maize	mitochondrion	75.09	73.45
HORVU3Hr1G045750.1	Barley	cytosol	47.21	72.99
Solyc04g080570.2.1	Tomato	plastid	73.98	72.89
HORVU3Hr1G045700.1	Barley	cytosol	46.84	72.41
Bra012077.1-P	Field mustard	mitochondrion	67.66	71.94
PGSC0003DMT400009474	Potato	mitochondrion	72.86	71.79
Bra032216.1-P	Field mustard	mitochondrion	73.23	71.38
KRH61144	Soybean	cytosol	57.62	71.1
Os12t0169700-01	Rice	mitochondrion	71.38	70.33
EER99796	Sorghum	mitochondrion	69.52	68.5
TraesCS2A01G144200.1	Wheat	mitochondrion	69.52	68.25
TraesCS2D01G148200.1	Wheat	mitochondrion	69.52	68.25
Zm00001d022324_P001	Maize	mitochondrion	68.77	67.77
TraesCS2B01G169200.1	Wheat	golgi	68.77	67.52
Os07t0642900-01	Rice	nucleus	68.4	67.4
Bra014069.1-P	Field mustard	mitochondrion	59.11	66.81
GSMUA_Achr3P09250_001	Banana	cytosol	37.55	66.01
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	8.55	65.71
Bra025750.1-P	Field mustard	cytosol	42.38	64.04
HORVU3Hr1G045680.1	Barley	cytosol, plastid	71.38	59.08
HORVU2Hr1G025530.2	Barley	plastid	63.57	55.88
Bra018042.1-P	Field mustard	mitochondrion	20.45	21.48
Bra029221.1-P	Field mustard	mitochondrion	20.07	21.43
Bra038640.1-P	Field mustard	mitochondrion	20.07	21.43
Bra035840.1-P	Field mustard	mitochondrion	20.45	21.07

Protein Annotations

EnsemblPlants:Bra016502.1	EnsemblPlants:Bra016502.1-P	EnsemblPlantsGene:Bra016502	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf
PANTHER:PTHR13061	PANTHER:PTHR13061:SF9	PFAM:PF00132	SUPFAM:SSF51161	UniParc:UPI0002546D45	UniProt:M4DJ24
MapMan:2.4.1.4.6	:	:	:	:	:

Description

AT1G19580 (E=2e-135) GAMMA CA1 | GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase

Coordinates

chrA08:-:18781599..18783605

Molecular Weight (calculated)

29140.1 Da

IEP (calculated)

9.166

GRAVY (calculated)

-0.159

Length

269 amino acids

Sequence
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNCFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGN VQIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVPPT IIGDNVTIGH SAVLHGCTVE DEAFIGMGAT LLDGVVVEKH ALVAAGALVR QNTRIPSGEI WGGNPAKFLR KLKSKEIDFI
201: PVSAENYSNL AKAHAAENAK PLNAIEFEKV LRKRYAAKDE EYDSMLGIVR ETPPELKLPN KNESKPSVL

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.