Factsheet for VIT_18s0001g12730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P09240_001	Banana	mitochondrion	42.65	89.23
GSMUA_AchrUn_...	Banana	mitochondrion	41.91	87.69
KRH61146	Soybean	cytosol	85.66	84.42
GSMUA_Achr3P09250_001	Banana	cytosol	47.43	84.31
KRH51833	Soybean	mitochondrion	83.82	83.52
KRH61144	Soybean	cytosol	66.91	83.49
AT1G19580.1	Thale cress	mitochondrion	84.19	83.27
EES00597	Sorghum	mitochondrion	77.94	80.61
TraesCS7A01G107200.1	Wheat	cytosol	77.57	80.53
TraesCS3D01G199500.1	Wheat	cytosol	77.57	80.53
TraesCS3B01G224000.1	Wheat	mitochondrion	77.57	80.53
TraesCS3A01G193500.1	Wheat	cytosol	77.57	80.53
Bra016502.1-P	Field mustard	mitochondrion	79.41	80.3
CDX83758	Canola	mitochondrion, plastid	79.41	80.3
CDX96658	Canola	mitochondrion	79.41	80.3
HORVU7Hr1G022550.1	Barley	cytosol	77.57	80.23
TraesCS7D01G101600.1	Wheat	cytosol	77.21	80.15
Solyc04g080570.2.1	Tomato	plastid	80.15	79.85
TraesCS7B01G005800.1	Wheat	cytosol	76.84	79.77
PGSC0003DMT400009474	Potato	mitochondrion	79.41	79.12
Zm00001d040515_P001	Maize	mitochondrion	75.74	78.63
Os01t0283100-01	Rice	mitochondrion	75.74	78.33
VIT_04s0023g02060.t01	Wine grape	cytosol	65.07	77.63
HORVU3Hr1G045700.1	Barley	cytosol	48.9	76.44
HORVU3Hr1G045750.1	Barley	cytosol	48.9	76.44
TraesCS2B01G169200.1	Wheat	golgi	76.84	76.28
Os12t0169700-01	Rice	mitochondrion	76.47	76.19
EER99796	Sorghum	mitochondrion	76.47	76.19
Zm00001d008215_P002	Maize	mitochondrion	76.47	75.64
Zm00001d022324_P001	Maize	mitochondrion	75.37	75.09
TraesCS2A01G144200.1	Wheat	mitochondrion	75.37	74.82
TraesCS2D01G148200.1	Wheat	mitochondrion	75.37	74.82
Os07t0642900-01	Rice	nucleus	73.9	73.63
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	9.19	71.43
HORVU2Hr1G025530.2	Barley	plastid	70.59	62.75
HORVU3Hr1G045680.1	Barley	cytosol, plastid	74.63	62.46
CDY29419	Canola	cytosol	38.97	57.61
Bra025750.1-P	Field mustard	cytosol	37.13	56.74
CDY39368	Canola	mitochondrion	40.81	45.68
VIT_17s0000g01240.t01	Wine grape	mitochondrion	20.96	23.27

Protein Annotations

EntrezGene:100247109	wikigene:100247109	Gene3D:2.160.10.10	MapMan:2.4.1.4.6	UniProt:A5C3G7	EMBL:AM480817
ProteinID:CAN79636	ProteinID:CAN79636.1	ProteinID:CBI19719	ProteinID:CBI19719.3	EMBL:FN595227	InterPro:Hexapep
EntrezGene:LOC100247109	wikigene:LOC100247109	PFAM:PF00132	PANTHER:PTHR13061	PANTHER:PTHR13061:SF9	SUPFAM:SSF51161
TIGR:TC53201	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0001524C8A	ArrayExpress:VIT_18s0001g12730	EnsemblPlantsGene:VIT_18s0001g12730	EnsemblPlants:VIT_18s0001g12730.t01
unigene:Vvi.1845	RefSeq:XP_002282021	RefSeq:XP_002282021.1	RefSeq:XP_002282034	RefSeq:XP_002282034.1	:

Description

No Description!

Coordinates

chr18:+:10857855..10863370

Molecular Weight (calculated)

29572.4 Da

IEP (calculated)

6.249

GRAVY (calculated)

-0.071

Length

272 amino acids

Sequence
(BLAST)

001: MGTLGKAIYT VGFWIRETGQ AIDRLGCRLQ GNYYFLEQIS RHRTLMNLFD KAPIVDKDAF VAPSASIIGD VQVGRGSSIW YGCVLRGDVN SISVGSGTNI
101: QDNSLVHVAK SNLSGKVLPT IIGDNVTVGH SAVLHGCTVE DEAFVGMGAT LLDGSIVEKH AMVAAGALVR QNTRIPCGEV WGGNPAKFLR KLTDEEIAFI
201: SQSAINYSNL AQVHAAENAK PFDEIEFEKV LRKKFARRDE DYDSMLGVVR ETPPELILPD NILPDKAPKV SQ

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.