Factsheet for VIT_04s0023g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G045750.1	Barley	cytosol	50.44	66.09
HORVU3Hr1G045700.1	Barley	cytosol	50.0	65.52
VIT_18s0001g12730.t01	Wine grape	cytosol	77.63	65.07
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	74.12	63.06
Solyc02g062600.2.1	Tomato	extracellular, nucleus	72.81	61.94
Solyc02g085040.2.1	Tomato	extracellular	70.61	59.63
PGSC0003DMT400009047	Potato	mitochondrion	70.61	59.63
KRH76755	Soybean	mitochondrion	69.74	58.89
KRH28712	Soybean	mitochondrion	68.86	58.15
TraesCS3D01G199500.1	Wheat	cytosol	66.23	57.63
TraesCS3A01G193500.1	Wheat	cytosol	65.79	57.25
Os12t0169700-01	Rice	mitochondrion	68.42	57.14
TraesCS3B01G224000.1	Wheat	mitochondrion	65.35	56.87
EER99796	Sorghum	mitochondrion	67.98	56.78
TraesCS2B01G169200.1	Wheat	golgi	67.98	56.57
TraesCS2A01G144200.1	Wheat	mitochondrion	67.98	56.57
TraesCS2D01G148200.1	Wheat	mitochondrion	67.98	56.57
TraesCS7D01G101600.1	Wheat	cytosol	64.91	56.49
EES00597	Sorghum	mitochondrion	64.91	56.27
TraesCS7B01G005800.1	Wheat	cytosol	64.47	56.11
Zm00001d022324_P001	Maize	mitochondrion	67.11	56.04
TraesCS7A01G107200.1	Wheat	cytosol	64.04	55.73
Os07t0642900-01	Rice	nucleus	66.67	55.68
HORVU7Hr1G022550.1	Barley	cytosol	64.04	55.51
Zm00001d040515_P001	Maize	mitochondrion	63.16	54.96
CDY45234	Canola	mitochondrion	60.53	54.55
Bra012077.1-P	Field mustard	mitochondrion	60.53	54.55
Zm00001d008215_P002	Maize	mitochondrion	64.47	53.45
Os01t0283100-01	Rice	mitochondrion	60.53	52.47
AT5G66510.2	Thale cress	mitochondrion	61.84	52.42
CDY50984	Canola	mitochondrion	59.21	51.92
CDY30772	Canola	mitochondrion	58.33	51.75
CDY55089	Canola	mitochondrion	57.89	51.16
HORVU2Hr1G025530.2	Barley	plastid	68.42	50.98
HORVU3Hr1G045680.1	Barley	cytosol, plastid	64.47	45.23
VIT_17s0000g01240.t01	Wine grape	mitochondrion	21.93	20.41
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	0.0	0.0

Protein Annotations

ArrayExpress:VIT_04s0023g02060	EMBL:FN594959	EnsemblPlants:VIT_04s0023g02060.t01	EnsemblPlantsGene:VIT_04s0023g02060	EntrezGene:100266838	EntrezGene:LOC100266838
Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF9	PFAM:PF00132
ProteinID:CBI17490	ProteinID:CBI17490.3	RefSeq:XP_002266322	RefSeq:XP_002266322.2	SUPFAM:SSF51161	UniParc:UPI0001BE0DC5
UniProt:D7SPB1	wikigene:100266838	wikigene:LOC100266838	MapMan:2.4.1.4.6	:	:

Description

No Description!

Coordinates

chr4:+:18571245..18574541

Molecular Weight (calculated)

24407.2 Da

IEP (calculated)

5.319

GRAVY (calculated)

0.071

Length

228 amino acids

Sequence
(BLAST)

001: MNLFDKAPVV AKDASVSVAP TASVIGDVKV GQRSSIWYGC VLRGDVNSIS IGSGTNIEDN ALVHVARSSL SGKVLPTTIG DTVTIGHGAV LHGCTVENEA
101: FIGMGATLLD GAFVEKHAMV AAGVLVLQDT RIPCGEVWAG NPARFLRKLT EEEIAFISQS AINYSNLAQV HAKENANSFD EIAYEKVLRK KFAYPETDYA
201: ALVSVDRETP PELILPDNIL PERLRKAT

Best Arabidopsis Sequence Match ( AT1G47260.1 )
(BLAST)

001: MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNTLVHVAK TNISGKVLPT LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV WGGNPAKFMR KLTDEEIVYI
201: SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF

Arabidopsis Description

GAMMACA2GAMMA CA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.