Factsheet for Os07t0642900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 7
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 18022940

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0169700-01	Rice	mitochondrion	94.87	94.87
Zm00001d022324_P001	Maize	mitochondrion	92.31	92.31
EER99796	Sorghum	mitochondrion	90.84	90.84
TraesCS2D01G148200.1	Wheat	mitochondrion	86.45	86.13
TraesCS2A01G144200.1	Wheat	mitochondrion	86.45	86.13
TraesCS2B01G169200.1	Wheat	golgi	85.71	85.4
KRH61146	Soybean	cytosol	78.02	77.17
KRH51833	Soybean	mitochondrion	75.82	75.82
GSMUA_Achr5P07880_001	Banana	cytosol, mitochondrion, plastid	30.77	75.68
VIT_18s0001g12730.t01	Wine grape	cytosol	73.63	73.9
PGSC0003DMT400009474	Potato	mitochondrion	73.63	73.63
Solyc04g080570.2.1	Tomato	plastid	73.26	73.26
Solyc02g062600.2.1	Tomato	extracellular, nucleus	71.06	72.39
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	71.06	72.39
GSMUA_Achr5P07890_001	Banana	mitochondrion	34.43	72.31
KRH61144	Soybean	cytosol	56.78	71.1
AT1G19580.1	Thale cress	mitochondrion	71.06	70.55
GSMUA_AchrUn_...	Banana	extracellular, golgi	42.49	70.3
HORVU2Hr1G025530.2	Barley	plastid	78.75	70.26
Solyc02g085040.2.1	Tomato	extracellular	68.5	69.26
PGSC0003DMT400009047	Potato	mitochondrion	68.5	69.26
Bra016502.1-P	Field mustard	mitochondrion	67.4	68.4
CDX96658	Canola	mitochondrion	67.4	68.4
CDX83758	Canola	mitochondrion, plastid	67.03	68.03
KRH76755	Soybean	mitochondrion	66.3	67.04
VIT_04s0023g02060.t01	Wine grape	cytosol	55.68	66.67
Os01t0283100-01	Rice	mitochondrion	64.1	66.54
KRH28712	Soybean	mitochondrion	65.57	66.3
CDY50984	Canola	mitochondrion	58.24	61.15
CDY45234	Canola	mitochondrion	56.41	60.87
AT5G66510.2	Thale cress	mitochondrion	59.71	60.59
GSMUA_Achr2P01940_001	Banana	cytosol	53.85	60.49
Bra012077.1-P	Field mustard	mitochondrion	56.04	60.47
CDY55089	Canola	mitochondrion	56.78	60.08
CDY30772	Canola	mitochondrion	56.04	59.53
CDY59959	Canola	mitochondrion	13.92	53.52
CDY29419	Canola	cytosol	32.6	48.37
Bra025750.1-P	Field mustard	cytosol	31.14	47.75
CDY39368	Canola	mitochondrion	34.8	39.09
Os02t0508000-01	Rice	mitochondrion	16.12	17.05

Protein Annotations

EMBL:AK060158	EnsemblPlants:Os07t0642900-01	EnsemblPlantsGene:Os07g0642900	EntrezGene:4344079	Gene3D:2.160.10.10	InterPro:Hexapep
InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF23	PFAM:PF00132	ProteinID:BAC16488.1	ProteinID:BAD30257.1
ProteinID:BAF22353.1	ProteinID:BAT02874.1	ProteinID:EAZ40840.1	RefSeq:XP_015645327.1	SUPFAM:SSF51161	UniParc:UPI00000AE5A5
UniProt:Q8GRK1	MapMan:2.4.1.4.6	:	:	:	:

Description

Bacterial transferase hexapeptide repeat domain containing protein. (Os07t0642900-01)

Coordinates

chr7:-:26775410..26778677

Molecular Weight (calculated)

29615.8 Da

IEP (calculated)

6.924

GRAVY (calculated)

-0.047

Length

273 amino acids

Sequence
(BLAST)

001: MGTLGRAIYT AGKWIRGTGQ AMDRLGSTIQ GGLRVDEQLP RHRTIMNIFE KEPRIHKDVF VAPSAAVIGD IEIGHGSSIW YGSILRGDVN SIHIGVGTNI
101: QDNSLVHVSK ANISGKVLPT IIGNSVTIGH SAVLHACIVE DEAFVGMGAT LLDGVVVEKH SMVGAGSLVK QNTRIPSGEV WVGNPAKFLR KLTEEEMAFI
201: AQSATNYINL AQVHAAENAK TFDEIELEKM LRKKFAHKDE EYDSMLGVVR EIPPELILPD SILPNKAQKA VAH

Best Arabidopsis Sequence Match ( AT1G47260.1 )
(BLAST)

001: MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNTLVHVAK TNISGKVLPT LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV WGGNPAKFMR KLTDEEIVYI
201: SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF

Arabidopsis Description

GAMMACA2GAMMA CA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.