Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P09250_001 | Banana | cytosol | 93.69 | 67.97 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi | 84.68 | 56.97 |
| TraesCS2B01G169200.1 | Wheat | golgi | 77.48 | 31.39 |
| EER99796 | Sorghum | mitochondrion | 76.58 | 31.14 |
| Os07t0642900-01 | Rice | nucleus | 75.68 | 30.77 |
| Os12t0169700-01 | Rice | mitochondrion | 75.68 | 30.77 |
| Zm00001d022324_P001 | Maize | mitochondrion | 75.68 | 30.77 |
| TraesCS2A01G144200.1 | Wheat | mitochondrion | 74.77 | 30.29 |
| TraesCS2D01G148200.1 | Wheat | mitochondrion | 74.77 | 30.29 |
| GSMUA_Achr2P01940_001 | Banana | cytosol | 63.06 | 28.81 |
| HORVU2Hr1G025530.2 | Barley | plastid | 77.48 | 28.1 |
| GSMUA_Achr2P06160_001 | Banana | mitochondrion | 3.6 | 1.58 |
| GSMUA_Achr6P27510_001 | Banana | mitochondrion | 2.7 | 1.2 |
| GSMUA_Achr3P09240_001 | Banana | mitochondrion | 0.0 | 0.0 |
| GSMUA_Achr5P07890_001 | Banana | mitochondrion | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P07880_001 | EnsemblPlants:GSMUA_Achr5T07880_001 | EnsemblPlantsGene:GSMUA_Achr5G07880_001 | Gene3D:2.160.10.10 | InterPro:Trimer_LpxA-like_sf | PANTHER:PTHR13061 |
| PANTHER:PTHR13061:SF9 | SUPFAM:SSF51161 | UniParc:UPI000295725B | UniProt:M0SWL7 | MapMan:35.1 | : |
Description
bacterial transferase hexapeptide domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G07880_001]
Coordinates
chr5:-:5649894..5651094
Molecular Weight (calculated)
12471.9 Da
IEP (calculated)
5.257
GRAVY (calculated)
-0.425
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAAGALVRQ NTRIPCGEVW GGNPAKFLRK LTDEEVAFIS ESAANYANLA QVHAAENVKS FDEIEFEKVL RKKFARRDEE YDSMLGVVRE VPPELILPDN
101: ILPDKSRKPS Q
101: ILPDKSRKPS Q
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Arabidopsis Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.