Factsheet for TraesCS2B01G169200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G144200.1	Wheat	mitochondrion	96.35	96.35
TraesCS2D01G148200.1	Wheat	mitochondrion	95.99	95.99
Zm00001d022324_P001	Maize	mitochondrion	89.78	90.11
Os12t0169700-01	Rice	mitochondrion	89.05	89.38
EER99796	Sorghum	mitochondrion	88.32	88.64
Os07t0642900-01	Rice	nucleus	85.4	85.71
HORVU2Hr1G025530.2	Barley	plastid	90.15	80.72
KRH51833	Soybean	mitochondrion	79.2	79.49
KRH61146	Soybean	cytosol	78.1	77.54
GSMUA_Achr5P07880_001	Banana	cytosol, mitochondrion, plastid	31.39	77.48
VIT_18s0001g12730.t01	Wine grape	cytosol	76.28	76.84
KRH61144	Soybean	cytosol	60.95	76.61
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	74.45	76.12
Solyc02g062600.2.1	Tomato	extracellular, nucleus	74.45	76.12
GSMUA_Achr5P07890_001	Banana	mitochondrion	35.77	75.38
PGSC0003DMT400009474	Potato	mitochondrion	74.45	74.73
Solyc04g080570.2.1	Tomato	plastid	74.45	74.73
PGSC0003DMT400009047	Potato	mitochondrion	70.44	71.48
Solyc02g085040.2.1	Tomato	extracellular	70.44	71.48
AT1G19580.1	Thale cress	mitochondrion	71.17	70.91
KRH76755	Soybean	mitochondrion	68.61	69.63
TraesCS3B01G224000.1	Wheat	mitochondrion	66.42	69.47
KRH28712	Soybean	mitochondrion	67.88	68.89
Bra016502.1-P	Field mustard	mitochondrion	67.52	68.77
CDX83758	Canola	mitochondrion, plastid	67.52	68.77
CDX96658	Canola	mitochondrion	67.52	68.77
VIT_04s0023g02060.t01	Wine grape	cytosol	56.57	67.98
TraesCS7B01G005800.1	Wheat	cytosol	64.96	67.94
GSMUA_AchrUn_...	Banana	extracellular, golgi	40.51	67.27
AT5G66510.2	Thale cress	mitochondrion	60.58	61.71
GSMUA_Achr2P01940_001	Banana	cytosol	54.38	61.32
CDY50984	Canola	mitochondrion	58.03	61.15
CDY59959	Canola	mitochondrion	15.69	60.56
Bra012077.1-P	Field mustard	mitochondrion	55.84	60.47
CDY45234	Canola	mitochondrion	55.47	60.08
CDY55089	Canola	mitochondrion	56.57	60.08
CDY30772	Canola	mitochondrion	55.84	59.53
CDY29419	Canola	cytosol	33.21	49.46
Bra025750.1-P	Field mustard	cytosol	31.75	48.88
CDY39368	Canola	mitochondrion	34.31	38.68
TraesCS6B01G215700.2	Wheat	mitochondrion	18.98	20.31

Protein Annotations

EnsemblPlants:TraesCS2B01G169200.1	EnsemblPlantsGene:TraesCS2B01G169200	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061
PANTHER:PTHR13061:SF23	PFAM:PF00132	SUPFAM:SSF51161	TIGR:cd04645	MapMan:2.4.1.4.6	:

Description

No Description!

Coordinates

chr2B:+:141986139..141989354

Molecular Weight (calculated)

29611.6 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.113

Length

274 amino acids

Sequence
(BLAST)

001: MGTLGRAIYT VGKWIRGTGQ AMDRLGSTIQ GGLRAEEQVS RHRTVMSIFD KEPRINKDVF VAPSASVIGD VEIGHGSSIW YGSILRGDVN SIRIGSGSNI
101: QDNSLVHVAK TNISGKVLPT IIGSNVTVGH SAVLHACTIE DEAFVGMGAT LLDGVVVEKH SMVGAGSLVK QNTRIPSGEV WVGNPAKFLR KLTEEEITFI
201: AQSAANYINL AHVHATENSK SFDEIELEKK LRKKFAHKDE EYDSMLGVVR EIPPQLILPD NILPDKAPKA AVAH

Best Arabidopsis Sequence Match ( AT1G47260.1 )
(BLAST)

001: MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNTLVHVAK TNISGKVLPT LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV WGGNPAKFMR KLTDEEIVYI
201: SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF

Arabidopsis Description

GAMMACA2GAMMA CA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.