Factsheet for Solyc04g080570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 8
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009474	Potato	mitochondrion	98.53	98.53
KRH61146	Soybean	cytosol	81.32	80.43
VIT_18s0001g12730.t01	Wine grape	cytosol	79.85	80.15
KRH51833	Soybean	mitochondrion	79.49	79.49
KRH61144	Soybean	cytosol	62.64	78.44
Os12t0169700-01	Rice	mitochondrion	77.29	77.29
Solyc02g062600.2.1	Tomato	extracellular, nucleus	75.82	77.24
GSMUA_Achr3P09240_001	Banana	mitochondrion	36.63	76.92
EER99796	Sorghum	mitochondrion	76.19	76.19
AT1G19580.1	Thale cress	mitochondrion	76.56	76.0
Zm00001d022324_P001	Maize	mitochondrion	75.46	75.46
TraesCS2D01G148200.1	Wheat	mitochondrion	75.46	75.18
TraesCS2A01G144200.1	Wheat	mitochondrion	75.46	75.18
GSMUA_Achr3P09250_001	Banana	cytosol	42.12	75.16
TraesCS2B01G169200.1	Wheat	golgi	74.73	74.45
Bra016502.1-P	Field mustard	mitochondrion	72.89	73.98
CDX83758	Canola	mitochondrion, plastid	72.89	73.98
CDX96658	Canola	mitochondrion	72.89	73.98
GSMUA_AchrUn_...	Banana	mitochondrion	35.16	73.85
Solyc02g085040.2.1	Tomato	extracellular	72.89	73.7
Os07t0642900-01	Rice	nucleus	73.26	73.26
EES00597	Sorghum	mitochondrion	69.23	71.86
TraesCS3D01G199500.1	Wheat	cytosol	67.77	70.61
HORVU7Hr1G022550.1	Barley	cytosol	67.4	69.96
Zm00001d040515_P001	Maize	mitochondrion	67.03	69.85
TraesCS7D01G101600.1	Wheat	cytosol	67.03	69.85
TraesCS3B01G224000.1	Wheat	mitochondrion	67.03	69.85
TraesCS3A01G193500.1	Wheat	cytosol	67.03	69.85
TraesCS7A01G107200.1	Wheat	cytosol	66.67	69.47
TraesCS7B01G005800.1	Wheat	cytosol	66.3	69.08
HORVU3Hr1G045700.1	Barley	cytosol	43.96	68.97
HORVU3Hr1G045750.1	Barley	cytosol	43.96	68.97
Os01t0283100-01	Rice	mitochondrion	66.3	68.82
Zm00001d008215_P002	Maize	mitochondrion	67.4	66.91
HORVU2Hr1G025530.2	Barley	plastid	70.33	62.75
CDY29419	Canola	cytosol	36.63	54.35
Bra025750.1-P	Field mustard	cytosol	35.16	53.93
HORVU3Hr1G045680.1	Barley	cytosol, plastid	64.1	53.85
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	5.86	45.71
CDY39368	Canola	mitochondrion	38.46	43.21
Solyc03g019720.2.1	Tomato	plastid	19.78	21.43

Protein Annotations

Gene3D:2.160.10.10	MapMan:2.4.1.4.6	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009651	GO:GO:0009791	GO:GO:0009901	GO:GO:0009908	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0031966	GO:GO:0042802	GO:GO:0045271	GO:GO:0070207
GO:GO:2000377	InterPro:Hexapep	UniProt:K4BVD6	PFAM:PF00132	PANTHER:PTHR13061	PANTHER:PTHR13061:SF9
SUPFAM:SSF51161	EnsemblPlantsGene:Solyc04g080570.2	EnsemblPlants:Solyc04g080570.2.1	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00018C8483	:

Description

Gamma carbonic anhydrase 2, mitochondrial [Source:Projected from Arabidopsis thaliana (AT1G47260) UniProtKB/Swiss-Prot;Acc:Q9C6B3]

Coordinates

chr4:+:64689317..64695236

Molecular Weight (calculated)

29453.3 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.114

Length

273 amino acids

Sequence
(BLAST)

001: MGTLGKAIYS LGSIVRATGK ALDRVGNRLQ GSSHIEEHLS RHRTLMNVFD KAPVVDKDVF VAPGASVIGD VHVGRNSSIW YGCVLRGDVN SISVGSGTNI
101: QDNSLVHVAK SNISQKVLPT IIGNNVTVGH SAVVHGCTIE DEAFIGMGAT LLDGVHVEKH AMVAAGALVK QNTRIPSGEV WAGNPAKFLR KLTDEEIAFI
201: AQSATNYCNL ARVHAAENSK SFDEIEFEKM LRKKYAKRDE EYDSMIGVVR ETPPELVLPD NILPEKAAKS IAQ

Best Arabidopsis Sequence Match ( AT1G47260.1 )
(BLAST)

001: MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNTLVHVAK TNISGKVLPT LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV WGGNPAKFMR KLTDEEIVYI
201: SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF

Arabidopsis Description

GAMMACA2GAMMA CA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.