CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040515_P001	Maize	mitochondrion	95.06	95.42
Os01t0283100-01	Rice	mitochondrion	88.21	88.21
TraesCS3B01G224000.1	Wheat	mitochondrion	86.31	86.64
TraesCS3D01G199500.1	Wheat	cytosol	86.31	86.64
TraesCS3A01G193500.1	Wheat	cytosol	85.93	86.26
HORVU7Hr1G022550.1	Barley	cytosol	85.55	85.55
TraesCS7B01G005800.1	Wheat	cytosol	85.17	85.5
TraesCS7A01G107200.1	Wheat	cytosol	85.17	85.5
TraesCS7D01G101600.1	Wheat	cytosol	85.17	85.5
HORVU3Hr1G045750.1	Barley	cytosol	53.23	80.46
HORVU3Hr1G045700.1	Barley	cytosol	53.23	80.46
Solyc02g062600.2.1	Tomato	extracellular, nucleus	80.99	79.48
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	80.61	79.1
VIT_18s0001g12730.t01	Wine grape	cytosol	80.61	77.94
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	10.27	77.14
CDX96658	Canola	mitochondrion	76.81	75.09
Bra016502.1-P	Field mustard	mitochondrion	76.81	75.09
AT1G19580.1	Thale cress	mitochondrion	78.33	74.91
CDX83758	Canola	mitochondrion, plastid	76.43	74.72
PGSC0003DMT400009047	Potato	mitochondrion	75.29	73.33
Solyc02g085040.2.1	Tomato	extracellular	75.29	73.33
KRH76755	Soybean	mitochondrion	74.9	72.96
KRH28712	Soybean	mitochondrion	74.52	72.59
KRH61146	Soybean	cytosol	76.05	72.46
KRH51833	Soybean	mitochondrion	74.14	71.43
KRH61144	Soybean	cytosol	58.94	71.1
Solyc04g080570.2.1	Tomato	plastid	71.86	69.23
PGSC0003DMT400009474	Potato	mitochondrion	71.48	68.86
CDY45234	Canola	mitochondrion	66.16	68.77
EER99796	Sorghum	mitochondrion	71.1	68.5
Bra012077.1-P	Field mustard	mitochondrion	65.02	67.59
AT5G66510.2	Thale cress	mitochondrion	68.44	66.91
CDY30772	Canola	mitochondrion	64.26	65.76
HORVU3Hr1G045680.1	Barley	cytosol, plastid	80.99	65.54
CDY50984	Canola	mitochondrion	64.64	65.38
CDY55089	Canola	mitochondrion	63.88	65.12
VIT_04s0023g02060.t01	Wine grape	cytosol	56.27	64.91
CDY29419	Canola	cytosol	36.88	52.72
Bra025750.1-P	Field mustard	cytosol	34.98	51.69
CDY59959	Canola	mitochondrion	12.93	47.89
CDY39368	Canola	mitochondrion	38.4	41.56
EES06863	Sorghum	mitochondrion	21.29	21.37

Protein Annotations

EnsemblPlants:EES00597	EnsemblPlantsGene:SORBI_3003G135600	EntrezGene:8078127	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf
PANTHER:PTHR13061	PANTHER:PTHR13061:SF9	PFAM:PF00132	ProteinID:EES00597	ProteinID:EES00597.1	RefSeq:XP_002455477.1
SUPFAM:SSF51161	unigene:Sbi.3294	UniParc:UPI0001A8437A	UniProt:C5XHE5	MapMan:2.4.1.4.6	:

Description

hypothetical protein

Coordinates

chr3:+:12879149..12883471

Molecular Weight (calculated)

28414.9 Da

IEP (calculated)

7.009

GRAVY (calculated)

-0.133

Length

263 amino acids

Sequence
(BLAST)

001: MAGLGKAMYA VGFWIRETGQ ALDRLGCRLQ GKYFFHEQIS RHRTIMNIFD KTPHVHKDAF VAPSASLIGD VQVGPGASIW YGCVLRGDAN NIQIGSGTNI
101: QDNSLVHVAK SNLSGKVFPT IIGNNVTVGH SAVLQGCTVE DEAFVGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPCGEV WGGNPAKFLR KLTDDEIAFI
201: AESAANYSSL SKVHAIENAK PLEKIEFEKV LRKKFAHQDE EYDSSIGVTR EAPPELTSPN PAQ

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.