Factsheet for TraesCS3B01G224000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 21043471
golgi: 25769308
mitochondrion: 26136264

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G199500.1	Wheat	cytosol	98.86	98.86
TraesCS3A01G193500.1	Wheat	cytosol	98.47	98.47
TraesCS7B01G005800.1	Wheat	cytosol	97.33	97.33
HORVU3Hr1G045750.1	Barley	cytosol	59.16	89.08
HORVU3Hr1G045700.1	Barley	cytosol	59.16	89.08
EES00597	Sorghum	mitochondrion	86.64	86.31
Os01t0283100-01	Rice	mitochondrion	85.88	85.55
Zm00001d040515_P001	Maize	mitochondrion	83.59	83.59
Zm00001d008215_P002	Maize	mitochondrion	84.35	80.36
VIT_18s0001g12730.t01	Wine grape	cytosol	80.53	77.57
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	78.24	76.49
Solyc02g062600.2.1	Tomato	extracellular, nucleus	77.86	76.12
AT1G19580.1	Thale cress	mitochondrion	79.77	76.0
CDX96658	Canola	mitochondrion	77.48	75.46
Bra016502.1-P	Field mustard	mitochondrion	77.48	75.46
CDX83758	Canola	mitochondrion, plastid	77.1	75.09
HORVU3Hr1G045680.1	Barley	cytosol, plastid	89.69	72.31
Solyc02g085040.2.1	Tomato	extracellular	74.43	72.22
PGSC0003DMT400009047	Potato	mitochondrion	74.43	72.22
KRH76755	Soybean	mitochondrion	73.66	71.48
KRH61146	Soybean	cytosol	75.19	71.38
KRH28712	Soybean	mitochondrion	73.28	71.11
KRH61144	Soybean	cytosol	58.78	70.64
KRH51833	Soybean	mitochondrion	72.52	69.6
CDY45234	Canola	mitochondrion	66.79	69.17
Bra012077.1-P	Field mustard	mitochondrion	66.41	68.77
CDY30772	Canola	mitochondrion	66.41	67.7
AT5G66510.2	Thale cress	mitochondrion	69.47	67.66
Solyc04g080570.2.1	Tomato	plastid	69.85	67.03
PGSC0003DMT400009474	Potato	mitochondrion	69.47	66.67
TraesCS2B01G169200.1	Wheat	golgi	69.47	66.42
CDY50984	Canola	mitochondrion	65.27	65.77
CDY55089	Canola	mitochondrion	64.5	65.5
VIT_04s0023g02060.t01	Wine grape	cytosol	56.87	65.35
CDY29419	Canola	cytosol	40.46	57.61
Bra025750.1-P	Field mustard	cytosol	38.55	56.74
CDY59959	Canola	mitochondrion	12.6	46.48
CDY39368	Canola	mitochondrion	40.08	43.21
TraesCS6B01G215700.2	Wheat	mitochondrion	20.99	21.48

Protein Annotations

EnsemblPlants:TraesCS3B01G224000.1	EnsemblPlantsGene:TraesCS3B01G224000	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF9
SEG:seg	SUPFAM:SSF51161	TIGR:cd04645	MapMan:2.4.1.4.6	:	:

Description

No Description!

Coordinates

chr3B:+:299120594..299144875

Molecular Weight (calculated)

28375.8 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.145

Length

262 amino acids

Sequence
(BLAST)

001: MAKAFYAVGF WIRETGQALD RLGCRLQGNY FFHEQISRHR TLMNIFDKAP HVHKEAFVAP SASLIGDVEV GQGSSIWYGC ILRGDANNVQ VGSGTNIQDN
101: SVVHVAKSNL SGKVFPTIIG DNVTVGHSAV LQGCTVEDEA FVGMGATLLD GVVVEKHGMV AAGALVRQNT RIPCGEVWGG NPAKFLRKLT DEEIAFIAES
201: AANYSNLAKA HAVENAKPLE KIDFEKVLRK KFAHQDNEHD SMLSVTREVP PELAPPSPTP AQ

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.