Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19580.1 | CDY17034 | AT1G47260.1 | 15821992 |
| AT1G19580.1 | CDY23649 | AT1G47260.1 | 15821992 |
| AT1G19580.1 | CDY47592 | AT1G47260.1 | 15821992 |
| AT1G19580.1 | CDY67628 | AT1G47260.1 | 15821992 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016502.1-P | Field mustard | mitochondrion | 99.63 | 99.63 |
| CDX83758 | Canola | mitochondrion, plastid | 98.88 | 98.88 |
| AT1G19580.1 | Thale cress | mitochondrion | 88.48 | 86.55 |
| GSMUA_Achr3P09240_001 | Banana | mitochondrion | 41.26 | 85.38 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 40.15 | 83.08 |
| VIT_18s0001g12730.t01 | Wine grape | cytosol | 80.3 | 79.41 |
| TraesCS7D01G101600.1 | Wheat | cytosol | 75.84 | 77.86 |
| TraesCS3D01G199500.1 | Wheat | cytosol | 75.46 | 77.48 |
| TraesCS3A01G193500.1 | Wheat | cytosol | 75.46 | 77.48 |
| TraesCS3B01G224000.1 | Wheat | mitochondrion | 75.46 | 77.48 |
| TraesCS7A01G107200.1 | Wheat | cytosol | 75.46 | 77.48 |
| HORVU7Hr1G022550.1 | Barley | cytosol | 75.46 | 77.19 |
| TraesCS7B01G005800.1 | Wheat | cytosol | 75.09 | 77.1 |
| EES00597 | Sorghum | mitochondrion | 75.09 | 76.81 |
| KRH61146 | Soybean | cytosol | 78.07 | 76.09 |
| Os01t0283100-01 | Rice | mitochondrion | 74.35 | 76.05 |
| Zm00001d040515_P001 | Maize | mitochondrion | 73.23 | 75.19 |
| KRH51833 | Soybean | mitochondrion | 75.46 | 74.36 |
| Zm00001d008215_P002 | Maize | mitochondrion | 75.09 | 73.45 |
| HORVU3Hr1G045750.1 | Barley | cytosol | 47.21 | 72.99 |
| Solyc04g080570.2.1 | Tomato | plastid | 73.98 | 72.89 |
| CDY47592 | Canola | mitochondrion | 74.72 | 72.83 |
| HORVU3Hr1G045700.1 | Barley | cytosol | 46.84 | 72.41 |
| CDY45234 | Canola | mitochondrion | 68.03 | 72.33 |
| CDY50984 | Canola | mitochondrion | 69.89 | 72.31 |
| CDY67628 | Canola | mitochondrion | 73.98 | 72.1 |
| PGSC0003DMT400009474 | Potato | mitochondrion | 72.86 | 71.79 |
| CDY17034 | Canola | mitochondrion | 73.61 | 71.74 |
| CDY23649 | Canola | mitochondrion | 73.23 | 71.12 |
| KRH61144 | Soybean | cytosol | 57.62 | 71.1 |
| CDY55089 | Canola | mitochondrion | 68.03 | 70.93 |
| CDY30772 | Canola | mitochondrion | 67.66 | 70.82 |
| Os12t0169700-01 | Rice | mitochondrion | 71.38 | 70.33 |
| EER99796 | Sorghum | mitochondrion | 69.52 | 68.5 |
| TraesCS2D01G148200.1 | Wheat | mitochondrion | 69.52 | 68.25 |
| TraesCS2A01G144200.1 | Wheat | mitochondrion | 69.52 | 68.25 |
| Zm00001d022324_P001 | Maize | mitochondrion | 68.77 | 67.77 |
| TraesCS2B01G169200.1 | Wheat | golgi | 68.77 | 67.52 |
| Os07t0642900-01 | Rice | nucleus | 68.4 | 67.4 |
| GSMUA_Achr3P09250_001 | Banana | cytosol | 37.55 | 66.01 |
| HORVU6Hr1G050700.1 | Barley | cytosol, mitochondrion | 8.55 | 65.71 |
| CDY29419 | Canola | cytosol | 44.61 | 65.22 |
| HORVU3Hr1G045680.1 | Barley | cytosol, plastid | 71.38 | 59.08 |
| CDY59959 | Canola | mitochondrion | 14.87 | 56.34 |
| HORVU2Hr1G025530.2 | Barley | plastid | 63.57 | 55.88 |
| CDY39368 | Canola | mitochondrion | 47.58 | 52.67 |
| CDY05862 | Canola | mitochondrion | 20.45 | 21.74 |
| CDY08089 | Canola | mitochondrion | 20.45 | 21.48 |
| CDY31369 | Canola | mitochondrion | 20.07 | 21.43 |
| CDY16720 | Canola | mitochondrion | 19.7 | 21.03 |
| CDY68990 | Canola | mitochondrion | 19.7 | 21.03 |
| CDX84424 | Canola | mitochondrion | 19.7 | 21.03 |
| CDY39864 | Canola | mitochondrion | 19.7 | 20.87 |
| CDY66238 | Canola | mitochondrion | 20.07 | 19.57 |
Protein Annotations
| EnsemblPlants:CDX96658 | EnsemblPlantsGene:GSBRNA2T00102867001 | Gene3D:2.160.10.10 | InterPro:Hexapep | InterPro:Trimer_LpxA-like_sf | PANTHER:PTHR13061 |
| PANTHER:PTHR13061:SF9 | PFAM:PF00132 | ProteinID:CDX96658 | ProteinID:CDX96658.1 | SUPFAM:SSF51161 | UniParc:UPI0004EE19E2 |
| MapMan:2.4.1.4.6 | : | : | : | : | : |
Description
BnaA08g22010D
Coordinates
chrLK031895:-:466520..468915
Molecular Weight (calculated)
29167.1 Da
IEP (calculated)
9.166
GRAVY (calculated)
-0.169
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNCFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGN VQIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVPPT IIGDNVTIGH SAVLHGCTVE DEAFIGMGAT LLDGVVVEKH ALVAAGALVR QNTRIPSGEI WGGNPAKFLR KLKSKEIDFI
201: PVSAENYSNL AKAHAAENAK PLNAIEFEKV LRKRYAAKDE EYDSMLGIVR ETPPELKLPN KNESKPNVL
101: QDNSLVHVAK SNLSGKVPPT IIGDNVTIGH SAVLHGCTVE DEAFIGMGAT LLDGVVVEKH ALVAAGALVR QNTRIPSGEI WGGNPAKFLR KLKSKEIDFI
201: PVSAENYSNL AKAHAAENAK PLNAIEFEKV LRKRYAAKDE EYDSMLGIVR ETPPELKLPN KNESKPNVL
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Arabidopsis Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.