CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68990	Canola	mitochondrion	98.81	98.81
CDY16720	Canola	mitochondrion	96.03	96.03
CDY31369	Canola	mitochondrion	92.86	92.86
CDY39864	Canola	mitochondrion	92.86	92.13
CDY05862	Canola	mitochondrion	92.06	91.7
CDY08089	Canola	mitochondrion	91.27	89.84
CDY66238	Canola	mitochondrion	95.24	86.96
AT5G63510.2	Thale cress	mitochondrion	88.1	79.57
KRH59820	Soybean	mitochondrion	75.4	75.1
VIT_17s0000g01240.t01	Wine grape	mitochondrion	72.22	74.29
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	74.21	73.91
Solyc03g019720.2.1	Tomato	plastid	72.62	72.62
GSMUA_Achr2P06160_001	Banana	mitochondrion	72.62	72.33
PGSC0003DMT400039315	Potato	mitochondrion	72.22	72.22
Os02t0508000-01	Rice	mitochondrion	72.62	70.93
GSMUA_Achr6P27510_001	Banana	mitochondrion	70.63	70.92
TraesCS6A01G188800.2	Wheat	golgi	71.43	70.31
TraesCS6B01G215700.2	Wheat	mitochondrion	71.03	69.92
TraesCS6D01G177500.2	Wheat	mitochondrion	71.03	69.92
HORVU6Hr1G044700.2	Barley	mitochondrion	71.43	69.5
EES06863	Sorghum	mitochondrion	71.83	69.08
Zm00001d016566_P001	Maize	mitochondrion	71.43	60.81
CDY50984	Canola	mitochondrion	23.41	22.69
CDY55089	Canola	mitochondrion	23.02	22.48
CDY45234	Canola	mitochondrion	21.43	21.34
CDY30772	Canola	mitochondrion	21.43	21.01
CDX83758	Canola	mitochondrion, plastid	21.03	19.7
CDX96658	Canola	mitochondrion	21.03	19.7
CDY47592	Canola	mitochondrion	21.03	19.2
CDY17034	Canola	mitochondrion	21.03	19.2
CDY67628	Canola	mitochondrion	20.63	18.84
CDY23649	Canola	mitochondrion	20.63	18.77
CDY29419	Canola	cytosol	11.11	15.22
CDY39368	Canola	mitochondrion	10.71	11.11
CDY59959	Canola	mitochondrion	2.78	9.86

Protein Annotations

EnsemblPlants:CDX84424	EnsemblPlantsGene:GSBRNA2T00141629001	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF22
ProteinID:CDX84424	ProteinID:CDX84424.1	SEG:seg	SUPFAM:SSF51161	UniParc:UPI0004EDE2E3	MapMan:2.4.1.4.7

Description

BnaC03g50760D

Coordinates

chrLK031837:+:1044870..1046039

Molecular Weight (calculated)

27542.1 Da

IEP (calculated)

8.305

GRAVY (calculated)

0.024

Length

252 amino acids

Sequence
(BLAST)

001: MATSIARFSR RGVASNLIRR YFAAEAAVAV KTEAPKPKPT VSPSPDRVNW DYRGQRQIIP LGQWLPKVAV DAYVAPNVVL AGQVTVWDGS SVWNGAVLRG
101: DLNKITLGFC SNVQERCVVH AAWSSPTGLP AETLIDRYVT VGAYSLLRSC TIEPECIIGQ HSILMEGSLV ETRSILEAGS VVPPGRRIPS GELWGGNPAR
201: FIRTLTNEET LEIPKLAVAI NHLSGDYFSE FLPYSTVYLE VEKFNKSLGI TV

Best Arabidopsis Sequence Match ( AT5G63510.1 )
(BLAST)

001: MATSIARLSR RGVTSNLIRR CFAAEAALAR KTELPKPQFT VSPSTDRVKW DYRGQRQIIP LGQWLPKVAV DAYVAPNVVL AGQVTVWDGS SVWNGAVLRG
101: DLNKITVGFC SNVQERCVVH AAWSSPTGLP AATIIDRYVT VGAYSLLRSC TIEPECIIGQ HSILMEGSLV ETRSILEAGS VVPPGRRIPS GELWGGNPAR
201: FIRTLTNEET LEIPKLAVAI NHLSGDYFSE FLPYSTVYLE VEKFKKSLGI AV

Arabidopsis Description

GAMMA CAL1Gamma carbonic anhydrase like 1 [Source:UniProtKB/TrEMBL;Acc:F4KAQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.