Factsheet for Os02t0508000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06863	Sorghum	mitochondrion	90.31	88.93
TraesCS6D01G177500.2	Wheat	mitochondrion	85.27	85.94
TraesCS6B01G215700.2	Wheat	mitochondrion	85.27	85.94
TraesCS6A01G188800.2	Wheat	golgi	84.88	85.55
HORVU6Hr1G044700.2	Barley	mitochondrion	83.33	83.01
GSMUA_Achr2P06160_001	Banana	mitochondrion	73.26	74.7
GSMUA_Achr6P27510_001	Banana	mitochondrion	72.48	74.5
VIT_17s0000g01240.t01	Wine grape	mitochondrion	70.54	74.29
CDY16720	Canola	mitochondrion	72.09	73.81
PGSC0003DMT400039315	Potato	mitochondrion	71.71	73.41
CDY31369	Canola	mitochondrion	71.32	73.02
CDY68990	Canola	mitochondrion	71.32	73.02
Bra038640.1-P	Field mustard	mitochondrion	71.32	73.02
Bra029221.1-P	Field mustard	mitochondrion	71.32	73.02
CDY39864	Canola	mitochondrion	71.71	72.83
Solyc03g019720.2.1	Tomato	plastid	70.93	72.62
CDX84424	Canola	mitochondrion	70.93	72.62
Zm00001d016566_P001	Maize	mitochondrion	82.95	72.3
CDY05862	Canola	mitochondrion	70.54	71.94
Bra018042.1-P	Field mustard	mitochondrion	70.54	71.09
CDY08089	Canola	mitochondrion	70.16	70.7
AT3G48680.1	Thale cress	mitochondrion	70.16	70.7
KRH59820	Soybean	mitochondrion	68.99	70.36
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	68.22	69.57
Bra035840.1-P	Field mustard	mitochondrion	69.38	68.58
CDY66238	Canola	mitochondrion	72.09	67.39
AT5G63510.2	Thale cress	mitochondrion	68.99	63.8
Os01t0283100-01	Rice	mitochondrion	21.32	20.91
Os12t0169700-01	Rice	mitochondrion	18.6	17.58
Os07t0642900-01	Rice	nucleus	17.05	16.12

Protein Annotations

EMBL:AK243610	EnsemblPlants:Os02t0508000-01	EnsemblPlantsGene:Os02g0508000	EntrezGene:4329443	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf
PANTHER:PTHR13061	PANTHER:PTHR13061:SF22	ProteinID:BAD23190.1	ProteinID:BAD23649.1	ProteinID:BAS78841.1	ProteinID:EAZ23177.1
RefSeq:XP_015622801.1	SEG:seg	SUPFAM:SSF51161	UniParc:UPI00003B057C	UniProt:Q6K2G7	MapMan:2.4.1.4.7

Description

Trimeric LpxA-like domain containing protein. (Os02t0508000-01)

Coordinates

chr2:-:18139118..18142753

Molecular Weight (calculated)

27500.2 Da

IEP (calculated)

7.874

GRAVY (calculated)

0.120

Length

258 amino acids

Sequence
(BLAST)

001: MAAASLSRLS HRAAAPSLRR LLSATASAPS PAAASPPPPP PSAAAAAAAG ADRVRWDYRG QRQLVPLGQW MPKVAVDAYV APEAVLAGQV TVYDGASVWS
101: GAVLRGDLNK ITLGFCANVQ ERCVLHAAWS APTGLPADTL VDRYVTVGAY CLLRSCTIEP ECIIGQHSIL MEGSLVETNS ILEAGSVLPP GRRIPTGELW
201: AGNPARFVRK LTNEEIMEIP KLAVAINDLM QSHFSEFLPY STAYLEVEKL KKSFSIPL

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.