Factsheet for Bra018042.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014069.1-P
Bra032216.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48680.1	Bra014069.1-P	AT1G47260.1	15821992
AT3G48680.1	Bra032216.1-P	AT1G47260.1	15821992

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08089	Canola	mitochondrion	99.61	99.61
AT3G48680.1	Thale cress	mitochondrion	94.92	94.92
Bra038640.1-P	Field mustard	mitochondrion	90.62	92.06
Bra029221.1-P	Field mustard	mitochondrion	88.67	90.08
Bra035840.1-P	Field mustard	mitochondrion	85.55	83.91
KRH59820	Soybean	mitochondrion	74.61	75.49
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	73.83	74.7
VIT_17s0000g01240.t01	Wine grape	mitochondrion	71.48	74.69
Solyc03g019720.2.1	Tomato	plastid	72.27	73.41
GSMUA_Achr2P06160_001	Banana	mitochondrion	71.88	72.73
PGSC0003DMT400039315	Potato	mitochondrion	71.09	72.22
TraesCS6D01G177500.2	Wheat	mitochondrion	70.7	70.7
TraesCS6B01G215700.2	Wheat	mitochondrion	70.7	70.7
Os02t0508000-01	Rice	mitochondrion	71.09	70.54
GSMUA_Achr6P27510_001	Banana	mitochondrion	69.14	70.52
TraesCS6A01G188800.2	Wheat	golgi	69.14	69.14
HORVU6Hr1G044700.2	Barley	mitochondrion	69.53	68.73
EES06863	Sorghum	mitochondrion	70.31	68.7
Zm00001d016566_P001	Maize	mitochondrion	69.92	60.47
Bra012077.1-P	Field mustard	mitochondrion	22.27	22.53
Bra016502.1-P	Field mustard	mitochondrion	21.48	20.45
Bra032216.1-P	Field mustard	mitochondrion	20.7	19.2
Bra014069.1-P	Field mustard	mitochondrion	15.23	16.39
Bra025750.1-P	Field mustard	cytosol	10.94	15.73

Protein Annotations

Gene3D:2.160.10.10	MapMan:2.4.1.4.7	EnsemblPlantsGene:Bra018042	EnsemblPlants:Bra018042.1	EnsemblPlants:Bra018042.1-P	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747
GO:GO:0005773	GO:GO:0005774	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009791
GO:GO:0010228	GO:GO:0016020	GO:GO:0031966	GO:GO:0045271	UniProt:M4DNF5	PANTHER:PTHR13061
PANTHER:PTHR13061:SF22	SUPFAM:SSF51161	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000253F2A3	SEG:seg	:

Description

AT3G48680 (E=3e-135) GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase

Coordinates

chrA06:-:9751156..9752307

Molecular Weight (calculated)

27968.7 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.037

Length

256 amino acids

Sequence
(BLAST)

001: MATSLARISR RCVTSSVSSN LIRRYLAAEA VAVATREAPK PKSEVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT LGFCSNVQER CVVHAAWSSP TGLPAETLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVVPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST VYLEVEKFKK SLGIAV

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.