Factsheet for TraesCS6D01G177500.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G215700.2	Wheat	mitochondrion	99.22	99.22
TraesCS6A01G188800.2	Wheat	golgi	92.19	92.19
HORVU6Hr1G044700.2	Barley	mitochondrion	88.67	87.64
Os02t0508000-01	Rice	mitochondrion	85.94	85.27
EES06863	Sorghum	mitochondrion	87.11	85.11
Zm00001d016566_P001	Maize	mitochondrion	83.98	72.64
CDY16720	Canola	mitochondrion	70.7	71.83
VIT_17s0000g01240.t01	Wine grape	mitochondrion	68.36	71.43
Bra038640.1-P	Field mustard	mitochondrion	70.31	71.43
CDY68990	Canola	mitochondrion	70.31	71.43
GSMUA_Achr6P27510_001	Banana	mitochondrion	69.92	71.31
GSMUA_Achr2P06160_001	Banana	mitochondrion	70.31	71.15
CDY05862	Canola	mitochondrion	70.31	71.15
CDY31369	Canola	mitochondrion	69.92	71.03
Bra029221.1-P	Field mustard	mitochondrion	69.92	71.03
CDX84424	Canola	mitochondrion	69.92	71.03
CDY39864	Canola	mitochondrion	70.31	70.87
Bra018042.1-P	Field mustard	mitochondrion	70.7	70.7
CDY08089	Canola	mitochondrion	70.7	70.7
PGSC0003DMT400039315	Potato	mitochondrion	69.53	70.63
Solyc03g019720.2.1	Tomato	plastid	69.53	70.63
AT3G48680.1	Thale cress	mitochondrion	69.92	69.92
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	68.36	69.17
KRH59820	Soybean	mitochondrion	67.97	68.77
Bra035840.1-P	Field mustard	mitochondrion	68.75	67.43
CDY66238	Canola	mitochondrion	70.31	65.22
AT5G63510.2	Thale cress	mitochondrion	68.36	62.72
TraesCS3D01G199500.1	Wheat	cytosol	21.88	21.37
TraesCS7D01G101600.1	Wheat	cytosol	21.88	21.37
TraesCS2D01G148200.1	Wheat	mitochondrion	20.7	19.34

Protein Annotations

EnsemblPlants:TraesCS6D01G177500.2	EnsemblPlantsGene:TraesCS6D01G177500	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061
PANTHER:PTHR13061:SF22	PFAM:PF00132	SEG:seg	SUPFAM:SSF51161	TIGR:cd04645	MapMan:2.4.1.4.7

Description

No Description!

Coordinates

chr6D:-:178848075..178858712

Molecular Weight (calculated)

27331.8 Da

IEP (calculated)

8.326

GRAVY (calculated)

0.109

Length

256 amino acids

Sequence
(BLAST)

001: MAAASLSRLS RRASAAAAPS LRRILSSTAT APAAPSSSPP HVAAAAAGAD RVRWDYRGQR QLVPLGQWLP KVAVDAYVAP DAVLAGQVTV HDGASVWSGS
101: VLRGDLNKIT LGFCANVQER SVLHAAWSAS TGLPAETLVD RYVTVGAYCL LRSCTIEPEC IIGQHSILME GSLVETNSVL EAGSVLAPGR RIPTGELWAG
201: NPARFVRKLT NEEIMEIPKL AVAINDLMQS HFSEFLPYSN AYLEVEKLKK SFSIPL

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.