CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31369	Canola	mitochondrion	97.24	98.02
CDY68990	Canola	mitochondrion	92.91	93.65
CDY16720	Canola	mitochondrion	92.91	93.65
CDX84424	Canola	mitochondrion	92.13	92.86
CDY05862	Canola	mitochondrion	90.16	90.51
CDY08089	Canola	mitochondrion	89.76	89.06
CDY66238	Canola	mitochondrion	92.52	85.14
AT5G63510.2	Thale cress	mitochondrion	86.61	78.85
VIT_17s0000g01240.t01	Wine grape	mitochondrion	72.83	75.51
KRH59820	Soybean	mitochondrion	75.2	75.49
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	74.02	74.31
GSMUA_Achr2P06160_001	Banana	mitochondrion	72.83	73.12
Solyc03g019720.2.1	Tomato	plastid	71.26	71.83
PGSC0003DMT400039315	Potato	mitochondrion	71.26	71.83
Os02t0508000-01	Rice	mitochondrion	72.83	71.71
TraesCS6A01G188800.2	Wheat	golgi	71.65	71.09
GSMUA_Achr6P27510_001	Banana	mitochondrion	70.08	70.92
TraesCS6B01G215700.2	Wheat	mitochondrion	70.87	70.31
TraesCS6D01G177500.2	Wheat	mitochondrion	70.87	70.31
HORVU6Hr1G044700.2	Barley	mitochondrion	70.87	69.5
EES06863	Sorghum	mitochondrion	71.65	69.47
Zm00001d016566_P001	Maize	mitochondrion	71.26	61.15
CDY50984	Canola	mitochondrion	23.23	22.69
CDY55089	Canola	mitochondrion	22.83	22.48
CDY45234	Canola	mitochondrion	21.26	21.34
CDY30772	Canola	mitochondrion	21.26	21.01
CDX83758	Canola	mitochondrion, plastid	20.87	19.7
CDX96658	Canola	mitochondrion	20.87	19.7
CDY47592	Canola	mitochondrion	20.87	19.2
CDY17034	Canola	mitochondrion	20.87	19.2
CDY67628	Canola	mitochondrion	20.47	18.84
CDY23649	Canola	mitochondrion	20.47	18.77
CDY29419	Canola	cytosol	11.42	15.76
CDY59959	Canola	mitochondrion	3.15	11.27
CDY39368	Canola	mitochondrion	10.63	11.11

Protein Annotations

EnsemblPlants:CDY39864	EnsemblPlantsGene:GSBRNA2T00068694001	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF22
ProteinID:CDY39864	ProteinID:CDY39864.1	SEG:seg	SUPFAM:SSF51161	UniParc:UPI0004EEB402	UniProt:A0A078HRD3
MapMan:2.4.1.4.7	:	:	:	:	:

Description

BnaC02g42540DBnaC02g42540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRD3]

Coordinates

chrLK032458:-:287396..289233

Molecular Weight (calculated)

27704.4 Da

IEP (calculated)

8.887

GRAVY (calculated)

0.043

Length

254 amino acids

Sequence
(BLAST)

001: MATSIARFSR RALTPNPIRR FFATSAALAA NAEAPKPKLT VSPSPSPDRV KWDYRGQRQI IPLGQWLPKV AVDAYVAPNV VLAGQVTVWD GSTVWNGAVL
101: RGDLNKITLG FCANVQERCV VHAAWSSPTG LPAETLIDRY VTVGAYSLLR SCTIEPECII GQHSILMEGS LVETRSILEA GSVVPPGRRI PSGELWGGNP
201: ARFIRTLTNE ETLEIPKLAV AINHLSGDYF SEFLPYSTVY LEVEKFKKSL GIAV

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.