Factsheet for VIT_17s0000g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039315	Potato	mitochondrion	78.37	76.19
Solyc03g019720.2.1	Tomato	plastid	77.96	75.79
KRH59820	Soybean	mitochondrion	75.92	73.52
Bra038640.1-P	Field mustard	mitochondrion	75.51	73.41
Bra029221.1-P	Field mustard	mitochondrion	75.1	73.02
CDY16720	Canola	mitochondrion	75.1	73.02
CDY31369	Canola	mitochondrion	75.1	73.02
CDY68990	Canola	mitochondrion	75.1	73.02
CDY39864	Canola	mitochondrion	75.51	72.83
GSMUA_Achr2P06160_001	Banana	mitochondrion	75.1	72.73
CDY05862	Canola	mitochondrion	74.69	72.33
CDX84424	Canola	mitochondrion	74.29	72.22
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	74.29	71.94
GSMUA_Achr6P27510_001	Banana	mitochondrion	73.47	71.71
AT3G48680.1	Thale cress	mitochondrion	74.69	71.48
CDY08089	Canola	mitochondrion	74.69	71.48
Bra018042.1-P	Field mustard	mitochondrion	74.69	71.48
Os02t0508000-01	Rice	mitochondrion	74.29	70.54
Bra035840.1-P	Field mustard	mitochondrion	73.06	68.58
TraesCS6B01G215700.2	Wheat	mitochondrion	71.43	68.36
TraesCS6D01G177500.2	Wheat	mitochondrion	71.43	68.36
HORVU6Hr1G044700.2	Barley	mitochondrion	72.24	68.34
TraesCS6A01G188800.2	Wheat	golgi	71.02	67.97
EES06863	Sorghum	mitochondrion	72.65	67.94
CDY66238	Canola	mitochondrion	73.88	65.58
AT5G63510.2	Thale cress	mitochondrion	73.88	64.87
Zm00001d016566_P001	Maize	mitochondrion	70.61	58.45
VIT_04s0023g02060.t01	Wine grape	cytosol	20.41	21.93
VIT_18s0001g12730.t01	Wine grape	cytosol	23.27	20.96

Protein Annotations

ArrayExpress:VIT_17s0000g01240	EMBL:FN594950	EnsemblPlants:VIT_17s0000g01240.t01	EnsemblPlantsGene:VIT_17s0000g01240	EntrezGene:100257801	EntrezGene:LOC100257801
Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF22	PFAM:PF00132
ProteinID:CCB43332	ProteinID:CCB43332.1	RefSeq:XP_002283913	RefSeq:XP_002283913.1	SUPFAM:SSF51161	unigene:Vvi.8813
UniParc:UPI00015C9F30	UniProt:F6GSW3	wikigene:100257801	wikigene:LOC100257801	MapMan:2.4.1.4.7	:

Description

No Description!

Coordinates

chr17:+:885283..891436

Molecular Weight (calculated)

26828.4 Da

IEP (calculated)

8.133

GRAVY (calculated)

0.070

Length

245 amino acids

Sequence
(BLAST)

001: MASLLRVCRK ALTSTATAQP LLWRGYAVES AAAIRESPDR VKWDYRGQRR IIPLGQWLPK IAVDAYVAPN VVLAGQVTVG DGSSVWNGSV LRGDLNKITI
101: GFCCNIQERC VIHAAWNSPT GLPAHTFIER YVTVGASSLL RSCTIEPECI VGQHSILMEG SLMETHSILE AGSVLPPGRR IPTGELWAGN PARFVRTLTH
201: EETLEIPKLA VAINDLSTSH FSEFLPYSTA YLEVEKLKKS FGISI

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.