CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY17034
CDY23649
CDY47592
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48680.1	CDY17034	AT1G47260.1	15821992
AT3G48680.1	CDY23649	AT1G47260.1	15821992
AT3G48680.1	CDY47592	AT1G47260.1	15821992
AT3G48680.1	CDY67628	AT1G47260.1	15821992

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018042.1-P	Field mustard	mitochondrion	99.61	99.61
CDY05862	Canola	mitochondrion	96.48	97.63
AT3G48680.1	Thale cress	mitochondrion	94.53	94.53
CDY68990	Canola	mitochondrion	90.23	91.67
CDX84424	Canola	mitochondrion	89.84	91.27
CDY16720	Canola	mitochondrion	89.84	91.27
CDY39864	Canola	mitochondrion	89.06	89.76
CDY31369	Canola	mitochondrion	88.28	89.68
CDY66238	Canola	mitochondrion	89.45	82.97
KRH59820	Soybean	mitochondrion	74.61	75.49
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	73.83	74.7
VIT_17s0000g01240.t01	Wine grape	mitochondrion	71.48	74.69
Solyc03g019720.2.1	Tomato	plastid	71.88	73.02
GSMUA_Achr2P06160_001	Banana	mitochondrion	71.48	72.33
PGSC0003DMT400039315	Potato	mitochondrion	70.7	71.83
TraesCS6B01G215700.2	Wheat	mitochondrion	70.7	70.7
TraesCS6D01G177500.2	Wheat	mitochondrion	70.7	70.7
Os02t0508000-01	Rice	mitochondrion	70.7	70.16
GSMUA_Achr6P27510_001	Banana	mitochondrion	68.75	70.12
TraesCS6A01G188800.2	Wheat	golgi	69.14	69.14
HORVU6Hr1G044700.2	Barley	mitochondrion	69.53	68.73
EES06863	Sorghum	mitochondrion	69.92	68.32
Zm00001d016566_P001	Maize	mitochondrion	69.53	60.14
CDY50984	Canola	mitochondrion	23.83	23.46
CDY55089	Canola	mitochondrion	23.44	23.26
CDY45234	Canola	mitochondrion	21.88	22.13
CDY30772	Canola	mitochondrion	21.88	21.79
CDX96658	Canola	mitochondrion	21.48	20.45
CDX83758	Canola	mitochondrion, plastid	21.48	20.45
CDY47592	Canola	mitochondrion	21.09	19.57
CDY17034	Canola	mitochondrion	21.09	19.57
CDY67628	Canola	mitochondrion	20.7	19.2
CDY23649	Canola	mitochondrion	20.7	19.13
CDY29419	Canola	cytosol	10.94	15.22
CDY59959	Canola	mitochondrion	3.12	11.27
CDY39368	Canola	mitochondrion	10.16	10.7

Protein Annotations

EnsemblPlants:CDY08089	EnsemblPlantsGene:GSBRNA2T00125360001	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF22
ProteinID:CDY08089	ProteinID:CDY08089.1	SEG:seg	SUPFAM:SSF51161	UniParc:UPI0004EEA1C5	UniProt:A0A078F502
MapMan:2.4.1.4.7	:	:	:	:	:

Description

BnaA06g16370DBnaA06g16370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F502]

Coordinates

chrLK031983:+:150137..151588

Molecular Weight (calculated)

27954.7 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.029

Length

256 amino acids

Sequence
(BLAST)

001: MATSLARISR RCVTSSVSSN LIRRYLAAEA VAVATREAPK PKSEVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGG
101: VLRGDLNKIT LGFCSNVQER CVVHAAWSSP TGLPAETLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVVPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST VYLEVEKFKK SLGIAV

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.