Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19580.1 | CDY17034 | AT1G47260.1 | 15821992 |
| AT1G19580.1 | CDY23649 | AT1G47260.1 | 15821992 |
| AT1G19580.1 | CDY47592 | AT1G47260.1 | 15821992 |
| AT1G19580.1 | CDY67628 | AT1G47260.1 | 15821992 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016502.1-P | Field mustard | mitochondrion | 99.26 | 99.26 |
| CDX96658 | Canola | mitochondrion | 98.88 | 98.88 |
| AT1G19580.1 | Thale cress | mitochondrion | 88.48 | 86.55 |
| GSMUA_Achr3P09240_001 | Banana | mitochondrion | 40.89 | 84.62 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 39.78 | 82.31 |
| VIT_18s0001g12730.t01 | Wine grape | cytosol | 80.3 | 79.41 |
| TraesCS7D01G101600.1 | Wheat | cytosol | 75.46 | 77.48 |
| TraesCS3D01G199500.1 | Wheat | cytosol | 75.09 | 77.1 |
| TraesCS3A01G193500.1 | Wheat | cytosol | 75.09 | 77.1 |
| TraesCS3B01G224000.1 | Wheat | mitochondrion | 75.09 | 77.1 |
| TraesCS7A01G107200.1 | Wheat | cytosol | 75.09 | 77.1 |
| HORVU7Hr1G022550.1 | Barley | cytosol | 75.09 | 76.81 |
| TraesCS7B01G005800.1 | Wheat | cytosol | 74.72 | 76.72 |
| EES00597 | Sorghum | mitochondrion | 74.72 | 76.43 |
| KRH61146 | Soybean | cytosol | 78.07 | 76.09 |
| Os01t0283100-01 | Rice | mitochondrion | 73.98 | 75.67 |
| Zm00001d040515_P001 | Maize | mitochondrion | 72.86 | 74.81 |
| KRH51833 | Soybean | mitochondrion | 75.46 | 74.36 |
| Zm00001d008215_P002 | Maize | mitochondrion | 74.72 | 73.09 |
| Solyc04g080570.2.1 | Tomato | plastid | 73.98 | 72.89 |
| CDY47592 | Canola | mitochondrion | 74.72 | 72.83 |
| HORVU3Hr1G045750.1 | Barley | cytosol | 46.84 | 72.41 |
| CDY50984 | Canola | mitochondrion | 69.89 | 72.31 |
| CDY67628 | Canola | mitochondrion | 73.98 | 72.1 |
| CDY45234 | Canola | mitochondrion | 67.66 | 71.94 |
| HORVU3Hr1G045700.1 | Barley | cytosol | 46.47 | 71.84 |
| PGSC0003DMT400009474 | Potato | mitochondrion | 72.86 | 71.79 |
| CDY17034 | Canola | mitochondrion | 73.61 | 71.74 |
| CDY23649 | Canola | mitochondrion | 73.23 | 71.12 |
| KRH61144 | Soybean | cytosol | 57.62 | 71.1 |
| CDY55089 | Canola | mitochondrion | 68.03 | 70.93 |
| CDY30772 | Canola | mitochondrion | 67.29 | 70.43 |
| Os12t0169700-01 | Rice | mitochondrion | 71.38 | 70.33 |
| EER99796 | Sorghum | mitochondrion | 69.52 | 68.5 |
| TraesCS2D01G148200.1 | Wheat | mitochondrion | 69.52 | 68.25 |
| TraesCS2A01G144200.1 | Wheat | mitochondrion | 69.52 | 68.25 |
| Zm00001d022324_P001 | Maize | mitochondrion | 68.77 | 67.77 |
| TraesCS2B01G169200.1 | Wheat | golgi | 68.77 | 67.52 |
| Os07t0642900-01 | Rice | nucleus | 68.03 | 67.03 |
| GSMUA_Achr3P09250_001 | Banana | cytosol | 37.92 | 66.67 |
| HORVU6Hr1G050700.1 | Barley | cytosol, mitochondrion | 8.55 | 65.71 |
| CDY29419 | Canola | cytosol | 44.24 | 64.67 |
| HORVU3Hr1G045680.1 | Barley | cytosol, plastid | 71.0 | 58.77 |
| CDY59959 | Canola | mitochondrion | 14.87 | 56.34 |
| HORVU2Hr1G025530.2 | Barley | plastid | 63.57 | 55.88 |
| CDY39368 | Canola | mitochondrion | 47.21 | 52.26 |
| CDY05862 | Canola | mitochondrion | 20.45 | 21.74 |
| CDY08089 | Canola | mitochondrion | 20.45 | 21.48 |
| CDY31369 | Canola | mitochondrion | 20.07 | 21.43 |
| CDY16720 | Canola | mitochondrion | 19.7 | 21.03 |
| CDY68990 | Canola | mitochondrion | 19.7 | 21.03 |
| CDX84424 | Canola | mitochondrion | 19.7 | 21.03 |
| CDY39864 | Canola | mitochondrion | 19.7 | 20.87 |
| CDY66238 | Canola | mitochondrion | 20.07 | 19.57 |
Protein Annotations
| EnsemblPlants:CDX83758 | EnsemblPlantsGene:GSBRNA2T00139496001 | Gene3D:2.160.10.10 | InterPro:Hexapep | InterPro:Trimer_LpxA-like_sf | PANTHER:PTHR13061 |
| PANTHER:PTHR13061:SF9 | PFAM:PF00132 | ProteinID:CDX83758 | ProteinID:CDX83758.1 | SUPFAM:SSF51161 | UniParc:UPI0004EB934D |
| MapMan:2.4.1.4.6 | : | : | : | : | : |
Description
BnaC08g18870D
Coordinates
chrLK031834:-:282680..285049
Molecular Weight (calculated)
29099.9 Da
IEP (calculated)
8.896
GRAVY (calculated)
-0.145
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNCFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGN VQIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVPAT IIGDNVTIGH SAVLHGCTVE DEAFIGMGAT LLDGVVVEKH ALVAAGALVR QNTRIPSGEI WGGNPAKFLR KLKSKEIDFI
201: PVSAENYSNL AKAHAAENAK PLNAIEFEKV LRKRYAAKDE EYDSMLGIVR ETPPELKLPN NNESKPSVL
101: QDNSLVHVAK SNLSGKVPAT IIGDNVTIGH SAVLHGCTVE DEAFIGMGAT LLDGVVVEKH ALVAAGALVR QNTRIPSGEI WGGNPAKFLR KLKSKEIDFI
201: PVSAENYSNL AKAHAAENAK PLNAIEFEKV LRKRYAAKDE EYDSMLGIVR ETPPELKLPN NNESKPSVL
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Arabidopsis Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.