CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51833	Soybean	mitochondrion	92.39	93.41
GSMUA_Achr3P09240_001	Banana	mitochondrion	40.94	86.92
KRH61144	Soybean	cytosol	68.48	86.7
VIT_18s0001g12730.t01	Wine grape	cytosol	84.42	85.66
GSMUA_AchrUn_...	Banana	mitochondrion	39.86	84.62
Solyc04g080570.2.1	Tomato	plastid	80.43	81.32
PGSC0003DMT400009474	Potato	mitochondrion	80.07	80.95
Os12t0169700-01	Rice	mitochondrion	80.07	80.95
AT1G19580.1	Thale cress	mitochondrion	80.43	80.73
GSMUA_Achr3P09250_001	Banana	cytosol	44.57	80.39
TraesCS2A01G144200.1	Wheat	mitochondrion	79.71	80.29
TraesCS2D01G148200.1	Wheat	mitochondrion	79.71	80.29
EER99796	Sorghum	mitochondrion	78.62	79.49
Zm00001d022324_P001	Maize	mitochondrion	77.9	78.75
TraesCS2B01G169200.1	Wheat	golgi	77.54	78.1
Bra016502.1-P	Field mustard	mitochondrion	76.09	78.07
CDX96658	Canola	mitochondrion	76.09	78.07
CDX83758	Canola	mitochondrion, plastid	76.09	78.07
Os07t0642900-01	Rice	nucleus	77.17	78.02
KRH76755	Soybean	mitochondrion	75.0	76.67
EES00597	Sorghum	mitochondrion	72.46	76.05
TraesCS3D01G199500.1	Wheat	cytosol	72.1	75.95
KRH28712	Soybean	mitochondrion	74.28	75.93
HORVU7Hr1G022550.1	Barley	cytosol	71.74	75.29
TraesCS3B01G224000.1	Wheat	mitochondrion	71.38	75.19
TraesCS3A01G193500.1	Wheat	cytosol	71.38	75.19
TraesCS7D01G101600.1	Wheat	cytosol	71.01	74.81
TraesCS7A01G107200.1	Wheat	cytosol	70.65	74.43
TraesCS7B01G005800.1	Wheat	cytosol	70.65	74.43
Zm00001d040515_P001	Maize	mitochondrion	70.29	74.05
Os01t0283100-01	Rice	mitochondrion	70.29	73.76
HORVU3Hr1G045750.1	Barley	cytosol	45.65	72.41
HORVU3Hr1G045700.1	Barley	cytosol	45.65	72.41
Zm00001d008215_P002	Maize	mitochondrion	71.01	71.27
HORVU2Hr1G025530.2	Barley	plastid	71.74	64.71
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	7.61	60.0
HORVU3Hr1G045680.1	Barley	cytosol, plastid	68.48	58.15
CDY29419	Canola	cytosol	36.23	54.35
Bra025750.1-P	Field mustard	cytosol	34.78	53.93
CDY39368	Canola	mitochondrion	38.04	43.21
KRH59820	Soybean	mitochondrion	19.2	20.95
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	18.48	20.16

Protein Annotations

EMBL:ACUP02002158	EnsemblPlants:KRH61146	EnsemblPlantsGene:GLYMA_04G030800	EntrezGene:100777972	Gene3D:2.160.10.10	InterPro:Hexapep
InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF9	PFAM:PF00132	PFAM:PF14602	ProteinID:KRH61145.1
ProteinID:KRH61146	ProteinID:KRH61146.1	SUPFAM:SSF51161	UniParc:UPI000233A0BA	UniProt:I1JT95	MapMan:2.4.1.4.6

Description

hypothetical protein

Coordinates

chr4:-:2497398..2501640

Molecular Weight (calculated)

29993.9 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.108

Length

276 amino acids

Sequence
(BLAST)

001: MGTLGRAIYS VGNWIRETGQ AIDRLGSRLQ GGYYFQEQLS RHRTLMNIFD KAPVVDKDVF VAPSASVIGD VQLGRGSSIW YGVVLRGDVN SIRVGNGTNI
101: QDNSLVHVAK SNLSGKVLPT IIGDNVTVGH SAVIHGCTVE DEAFVGMGAI LLDGVVVEKN AMVAAGALVR QNTRIPSGEV WAGNPAKFLR KLTDEEIAFI
201: SQSATNYTNL AQVHAAENSK SFDEIEFEKV LRKKFARKDE EYDSMLGVVR EIPPELILPD NVLPDKAEKA LKKSGI

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.