Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016502.1-P | Field mustard | mitochondrion | 86.55 | 88.48 |
| CDX83758 | Canola | mitochondrion, plastid | 86.55 | 88.48 |
| CDX96658 | Canola | mitochondrion | 86.55 | 88.48 |
| GSMUA_Achr3P09240_001 | Banana | mitochondrion | 40.73 | 86.15 |
| VIT_18s0001g12730.t01 | Wine grape | cytosol | 83.27 | 84.19 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 39.27 | 83.08 |
| KRH61146 | Soybean | cytosol | 80.73 | 80.43 |
| TraesCS7D01G101600.1 | Wheat | cytosol | 76.36 | 80.15 |
| TraesCS3A01G193500.1 | Wheat | cytosol | 76.0 | 79.77 |
| TraesCS3B01G224000.1 | Wheat | mitochondrion | 76.0 | 79.77 |
| TraesCS3D01G199500.1 | Wheat | cytosol | 76.0 | 79.77 |
| HORVU7Hr1G022550.1 | Barley | cytosol | 76.0 | 79.47 |
| TraesCS7A01G107200.1 | Wheat | cytosol | 75.64 | 79.39 |
| TraesCS7B01G005800.1 | Wheat | cytosol | 75.64 | 79.39 |
| KRH51833 | Soybean | mitochondrion | 78.18 | 78.75 |
| EES00597 | Sorghum | mitochondrion | 74.91 | 78.33 |
| Os01t0283100-01 | Rice | mitochondrion | 74.18 | 77.57 |
| GSMUA_Achr3P09250_001 | Banana | cytosol | 42.91 | 77.12 |
| Solyc04g080570.2.1 | Tomato | plastid | 76.0 | 76.56 |
| Zm00001d040515_P001 | Maize | mitochondrion | 72.73 | 76.34 |
| KRH61144 | Soybean | cytosol | 60.36 | 76.15 |
| PGSC0003DMT400009474 | Potato | mitochondrion | 74.91 | 75.46 |
| HORVU3Hr1G045750.1 | Barley | cytosol | 47.64 | 75.29 |
| HORVU3Hr1G045700.1 | Barley | cytosol | 47.64 | 75.29 |
| Zm00001d008215_P002 | Maize | mitochondrion | 74.91 | 74.91 |
| AT5G66510.2 | Thale cress | mitochondrion | 72.73 | 74.35 |
| AT1G47260.1 | Thale cress | mitochondrion | 74.91 | 74.1 |
| Os12t0169700-01 | Rice | mitochondrion | 73.45 | 73.99 |
| EER99796 | Sorghum | mitochondrion | 72.0 | 72.53 |
| Zm00001d022324_P001 | Maize | mitochondrion | 71.27 | 71.79 |
| TraesCS2A01G144200.1 | Wheat | mitochondrion | 70.91 | 71.17 |
| TraesCS2B01G169200.1 | Wheat | golgi | 70.91 | 71.17 |
| TraesCS2D01G148200.1 | Wheat | mitochondrion | 70.91 | 71.17 |
| Os07t0642900-01 | Rice | nucleus | 70.55 | 71.06 |
| HORVU6Hr1G050700.1 | Barley | cytosol, mitochondrion | 8.36 | 65.71 |
| CDY29419 | Canola | cytosol | 42.55 | 63.59 |
| Bra025750.1-P | Field mustard | cytosol | 40.73 | 62.92 |
| HORVU3Hr1G045680.1 | Barley | cytosol, plastid | 72.73 | 61.54 |
| HORVU2Hr1G025530.2 | Barley | plastid | 66.18 | 59.48 |
| CDY39368 | Canola | mitochondrion | 45.45 | 51.44 |
| AT3G48680.1 | Thale cress | mitochondrion | 19.27 | 20.7 |
| AT5G63510.2 | Thale cress | mitochondrion | 20.0 | 19.71 |
Protein Annotations
| Gene3D:2.160.10.10 | MapMan:2.4.1.4.6 | EntrezGene:838545 | UniProt:A0A178WHZ1 | ProteinID:AAF79435.1 | ProteinID:AAF98404.1 |
| ProteinID:AEE29870.1 | EMBL:AK175388 | EMBL:AK176844 | EMBL:AK176887 | EMBL:AK229264 | ArrayExpress:AT1G19580 |
| EnsemblPlantsGene:AT1G19580 | RefSeq:AT1G19580 | TAIR:AT1G19580 | RefSeq:AT1G19580-TAIR-G | EnsemblPlants:AT1G19580.1 | TAIR:AT1G19580.1 |
| EMBL:AY085025 | Unigene:At.28167 | Symbol:GAMMA CA1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004089 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005747 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009853 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016829 | GO:GO:0031966 | GO:GO:0045271 | GO:GO:0046872 | GO:GO:0070207 |
| InterPro:Hexapep | RefSeq:NP_564091.1 | ProteinID:OAP17999.1 | PFAM:PF00132 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR13061 |
| PANTHER:PTHR13061:SF9 | UniProt:Q9FWR5 | SUPFAM:SSF51161 | InterPro:Trimer_LpxA-like_sf | UniParc:UPI00000A6AF0 | SEG:seg |
Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
Coordinates
chr1:+:6774683..6777568
Molecular Weight (calculated)
29972.8 Da
IEP (calculated)
7.694
GRAVY (calculated)
-0.223
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.