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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 6
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
nucleus: 21132161
mitochondrion: 21766870
mitochondrion: 27780359
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 21766870 doi
S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH76755 Soybean mitochondrion 96.67 96.67
PGSC0003DMT400040041 Potato cytosol, mitochondrion 78.15 78.73
Solyc02g062600.2.1 Tomato extracellular, nucleus 76.67 77.24
Solyc02g085040.2.1 Tomato extracellular 75.56 75.56
PGSC0003DMT400009047 Potato mitochondrion 75.56 75.56
Os01t0283100-01 Rice mitochondrion 73.33 75.29
EES00597 Sorghum mitochondrion 72.59 74.52
TraesCS3A01G193500.1 Wheat cytosol 72.22 74.43
KRH61146 Soybean cytosol 75.93 74.28
TraesCS3D01G199500.1 Wheat cytosol 71.85 74.05
KRH51833 Soybean mitochondrion 74.81 73.99
KRH61144 Soybean cytosol 59.63 73.85
Zm00001d040515_P001 Maize mitochondrion 71.48 73.66
TraesCS7D01G101600.1 Wheat cytosol 71.11 73.28
TraesCS7B01G005800.1 Wheat cytosol 71.11 73.28
TraesCS3B01G224000.1 Wheat mitochondrion 71.11 73.28
Bra012077.1-P Field mustard mitochondrion 68.52 73.12
TraesCS7A01G107200.1 Wheat cytosol 70.74 72.9
HORVU7Hr1G022550.1 Barley cytosol 70.74 72.62
CDY45234 Canola mitochondrion 67.78 72.33
CDY30772 Canola mitochondrion 68.52 71.98
AT5G66510.2 Thale cress mitochondrion 70.37 70.63
Zm00001d008215_P002 Maize mitochondrion 71.85 70.55
CDY55089 Canola mitochondrion 66.67 69.77
CDY50984 Canola mitochondrion 67.04 69.62
HORVU3Hr1G045700.1 Barley cytosol 44.81 69.54
HORVU3Hr1G045750.1 Barley cytosol 44.81 69.54
VIT_04s0023g02060.t01 Wine grape cytosol 58.15 68.86
HORVU6Hr1G050700.1 Barley cytosol, mitochondrion 8.89 68.57
TraesCS2B01G169200.1 Wheat golgi 68.89 67.88
EER99796 Sorghum mitochondrion 68.52 67.77
Os12t0169700-01 Rice mitochondrion 68.15 67.4
TraesCS2A01G144200.1 Wheat mitochondrion 67.78 66.79
TraesCS2D01G148200.1 Wheat mitochondrion 67.78 66.79
Zm00001d022324_P001 Maize mitochondrion 67.41 66.67
Os07t0642900-01 Rice nucleus 66.3 65.57
HORVU3Hr1G045680.1 Barley cytosol, plastid 70.37 58.46
HORVU2Hr1G025530.2 Barley plastid 63.33 55.88
KRH59820 Soybean mitochondrion 21.48 22.92
KRH41125 Soybean endoplasmic reticulum, mitochondrion 21.48 22.92
Protein Annotations
EMBL:ACUP02006761EnsemblPlants:KRH28712EnsemblPlantsGene:GLYMA_11G070900EntrezGene:100782403Gene3D:2.160.10.10InterPro:Hexapep
InterPro:Trimer_LpxA-like_sfPANTHER:PTHR13061PANTHER:PTHR13061:SF9PFAM:PF00132ProteinID:KRH28712ProteinID:KRH28712.1
SUPFAM:SSF51161UniParc:UPI000233D6BFUniProt:I1LHV3MapMan:2.4.1.4.6::
Description
hypothetical protein
Coordinates
chr11:+:5293140..5296932
Molecular Weight (calculated)
29267.8 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.139
Length
270 amino acids
Sequence
(BLAST)
001: MGTLGRAFYA VGFWIRETGQ AIDRLGSRLQ GNYLFQEQLS RHRPLMNLFD KAPSVHRDAF VAPSASLLGD VHVGPASSIW YGCVLRGDVN SITIGSGTNI
101: QDNSLVHVAK SNLSGKVLPT IIGDNVTVGH SAVLQGCTVE DEAFIGMGAT LLDGVYVEKH AMVAAGALVR QNTRIPYGEV WGGNPARFLR KLTEDEMTFF
201: SQSALNYSNL AQAHSAENAK GLDETEFVKV LHKKFARHGD EYHSVLGGVQ ETPTELKSSD NVLLDKVPKA
Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Arabidopsis Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.