Factsheet for PGSC0003DMT400040041

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062600.2.1	Tomato	extracellular, nucleus	98.13	98.13
PGSC0003DMT400009047	Potato	mitochondrion	86.57	85.93
EES00597	Sorghum	mitochondrion	79.1	80.61
TraesCS3D01G199500.1	Wheat	cytosol	77.24	79.01
KRH76755	Soybean	mitochondrion	79.48	78.89
HORVU7Hr1G022550.1	Barley	cytosol	76.87	78.33
Zm00001d040515_P001	Maize	mitochondrion	76.49	78.24
TraesCS3B01G224000.1	Wheat	mitochondrion	76.49	78.24
TraesCS3A01G193500.1	Wheat	cytosol	76.49	78.24
KRH28712	Soybean	mitochondrion	78.73	78.15
TraesCS7D01G101600.1	Wheat	cytosol	76.12	77.86
TraesCS7B01G005800.1	Wheat	cytosol	75.75	77.48
TraesCS7A01G107200.1	Wheat	cytosol	75.37	77.1
Os01t0283100-01	Rice	mitochondrion	75.37	76.81
PGSC0003DMT400009474	Potato	mitochondrion	77.24	75.82
Zm00001d008215_P002	Maize	mitochondrion	76.87	74.91
TraesCS2B01G169200.1	Wheat	golgi	76.12	74.45
VIT_04s0023g02060.t01	Wine grape	cytosol	63.06	74.12
Os12t0169700-01	Rice	mitochondrion	75.37	73.99
TraesCS2D01G148200.1	Wheat	mitochondrion	75.37	73.72
TraesCS2A01G144200.1	Wheat	mitochondrion	75.37	73.72
HORVU3Hr1G045750.1	Barley	cytosol	47.76	73.56
HORVU3Hr1G045700.1	Barley	cytosol	47.76	73.56
EER99796	Sorghum	mitochondrion	74.25	72.89
Bra012077.1-P	Field mustard	mitochondrion	68.66	72.73
Zm00001d022324_P001	Maize	mitochondrion	73.51	72.16
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	9.33	71.43
Os07t0642900-01	Rice	nucleus	72.39	71.06
AT5G66510.2	Thale cress	mitochondrion	71.27	71.0
HORVU2Hr1G025530.2	Barley	plastid	69.4	60.78
HORVU3Hr1G045680.1	Barley	cytosol, plastid	72.76	60.0
CDY59959	Canola	mitochondrion	13.81	52.11
PGSC0003DMT400039315	Potato	mitochondrion	22.01	23.41

Protein Annotations

EMBL:DQ284493	EnsemblPlants:PGSC0003DMT400040041	EnsemblPlantsGene:PGSC0003DMG400015489	EntrezGene:102577772	Gene3D:2.160.10.10	InterPro:Hexapep
InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF9	PFAM:PF00132	PGSC:PGSC0003DMG400015489	ProteinID:ABB86281
ProteinID:ABB86281.1	RefSeq:XP_006346962.1	RefSeq:XP_006346963.1	SUPFAM:SSF51161	UniParc:UPI0002960914	UniProt:M1B973
MapMan:2.4.1.4.6	:	:	:	:	:

Description

Transcription factor APFI [Source:PGSC_GENE;Acc:PGSC0003DMG400015489]

Coordinates

chr2:-:20837603..20846206

Molecular Weight (calculated)

29027.8 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.062

Length

268 amino acids

Sequence
(BLAST)

001: MGTLGKAIYT VGFWIRETGQ AIDRLGCRLQ GNYYFHEQLS RHRTLMNLFN KAPMVDKDAF VAPSASLIGD VHVGRNASIW YGCVLRGDVN SISIGAGSNI
101: QDNSLVHVAK SNLSGKVLPT IIGNNVTVGH SAVLHGCTVE DEAFVGMGAT LLDGAVVEKN AMVAAGALVR QNTRIPCGEV WGGNPARFLR KLTQEEIAFI
201: SESAANYSNL AQVHAGENAK SFDAIEFEKV LRKKFARKDE EYDSMLGVVR ETPPELVLPD NIQAPKAI

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.