Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P09250_001 | Banana | cytosol | 41.98 | 66.67 |
| GSMUA_Achr5P07880_001 | Banana | cytosol, mitochondrion, plastid | 28.81 | 63.06 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi | 41.56 | 61.21 |
| EER99796 | Sorghum | mitochondrion | 61.32 | 54.58 |
| TraesCS2A01G144200.1 | Wheat | mitochondrion | 61.32 | 54.38 |
| TraesCS2B01G169200.1 | Wheat | golgi | 61.32 | 54.38 |
| TraesCS2D01G148200.1 | Wheat | mitochondrion | 61.32 | 54.38 |
| Os12t0169700-01 | Rice | mitochondrion | 60.91 | 54.21 |
| Zm00001d022324_P001 | Maize | mitochondrion | 60.91 | 54.21 |
| Os07t0642900-01 | Rice | nucleus | 60.49 | 53.85 |
| HORVU2Hr1G025530.2 | Barley | plastid | 60.49 | 48.04 |
| GSMUA_Achr3P09240_001 | Banana | mitochondrion | 25.1 | 46.92 |
| GSMUA_Achr5P07890_001 | Banana | mitochondrion | 25.1 | 46.92 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.87 | 44.62 |
| GSMUA_Achr2P06160_001 | Banana | mitochondrion | 15.23 | 14.62 |
| GSMUA_Achr6P27510_001 | Banana | mitochondrion | 14.4 | 13.94 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P01940_001 | EnsemblPlants:GSMUA_Achr2T01940_001 | EnsemblPlantsGene:GSMUA_Achr2G01940_001 | InterPro:Hexapep | InterPro:Trimer_LpxA-like_sf | PANTHER:PTHR13061 |
| PANTHER:PTHR13061:SF9 | PFAM:PF00132 | SUPFAM:SSF51161 | UniParc:UPI0002956E01 | UniProt:M0S4D5 | MapMan:2.4.1.4.6 |
Description
bacterial transferase hexapeptide domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G01940_001]
Coordinates
chr2:+:7796370..7800480
Molecular Weight (calculated)
26578.0 Da
IEP (calculated)
6.394
GRAVY (calculated)
0.011
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDKVPKVHE DVFVAPSASV IGDIEVGTDP RFGMDAFREQ FNFLLLMGEK LPCICKWSGS YGQFVIMTSF FCGRFAFSFC DVNSIRVGTG TNIQDHSLVH
101: VAKSNLSGKV LPTIIGDNVT VGHSAVLHGC TVEDEAFVGM GAVLLDRVVV EKHGMVAGGA LVRQNTKIPS GEVWGGNPAK VLKKLSEEEI AFISQSAANY
201: CNLARAHAVE NAKPFDEIEF EKMLRKKFAR RDEEYGSLGV DRP
101: VAKSNLSGKV LPTIIGDNVT VGHSAVLHGC TVEDEAFVGM GAVLLDRVVV EKHGMVAGGA LVRQNTKIPS GEVWGGNPAK VLKKLSEEEI AFISQSAANY
201: CNLARAHAVE NAKPFDEIEF EKMLRKKFAR RDEEYGSLGV DRP
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Arabidopsis Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.