Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 3
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35320.1 | CDY17034 | AT1G47260.1 | 15821992 |
| AT4G35320.1 | CDY23649 | AT1G47260.1 | 15821992 |
| AT4G35320.1 | CDY47592 | AT1G47260.1 | 15821992 |
| AT4G35320.1 | CDY67628 | AT1G47260.1 | 15821992 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011606.1-P | Field mustard | plastid | 100.0 | 100.0 |
| CDX69130 | Canola | plastid | 95.04 | 93.71 |
| AT4G35320.1 | Thale cress | plastid | 79.43 | 76.19 |
| CDX95195 | Canola | plastid | 56.74 | 55.94 |
| CDY66481 | Canola | plastid | 56.74 | 55.94 |
| CDY52604 | Canola | plastid | 56.03 | 55.24 |
| KRH14006 | Soybean | cytosol, plastid | 41.84 | 47.2 |
| KRH74108 | Soybean | plastid | 45.39 | 43.54 |
| Solyc01g112260.2.1 | Tomato | nucleus, plastid | 37.59 | 35.1 |
| VIT_03s0038g03980.t01 | Wine grape | plastid | 46.1 | 30.66 |
| TraesCS7A01G247800.1 | Wheat | cytosol | 35.46 | 29.41 |
| TraesCS7D01G246500.1 | Wheat | cytosol, plastid | 34.75 | 28.82 |
| GSMUA_Achr4P21850_001 | Banana | nucleus | 33.33 | 28.31 |
| EES07366 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 37.59 | 27.89 |
| HORVU1Hr1G062730.1 | Barley | cytosol | 22.7 | 27.83 |
| Zm00001d017837_P001 | Maize | nucleus | 37.59 | 27.75 |
| Os08t0511400-01 | Rice | cytosol | 34.04 | 27.75 |
| Os02t0715300-01 | Rice | cytosol, mitochondrion, nucleus | 35.46 | 27.32 |
| TraesCS6D01G260100.1 | Wheat | nucleus | 34.75 | 27.07 |
| TraesCS6A01G279700.1 | Wheat | nucleus | 34.75 | 26.49 |
| TraesCS6B01G308500.1 | Wheat | nucleus | 34.04 | 25.95 |
| HORVU6Hr1G070290.1 | Barley | nucleus | 33.33 | 25.41 |
| Zm00001d031464_P001 | Maize | plastid | 28.37 | 24.54 |
| GSMUA_Achr4P18190_001 | Banana | plastid | 36.88 | 24.41 |
| EES14260 | Sorghum | cytosol | 29.08 | 23.43 |
| Zm00001d052898_P001 | Maize | plastid | 26.24 | 23.42 |
| HORVU7Hr1G050980.1 | Barley | mitochondrion | 38.3 | 23.28 |
| TraesCS7B01G143700.1 | Wheat | mitochondrion | 35.46 | 21.83 |
Protein Annotations
| EnsemblPlants:CDX75494 | EnsemblPlantsGene:GSBRNA2T00121392001 | PANTHER:PTHR35714 | PANTHER:PTHR35714:SF1 | ProteinID:CDX75494 | ProteinID:CDX75494.1 |
| SEG:seg | UniParc:UPI000254712C | MapMan:35.2 | : | : | : |
Description
BnaA01g02080D
Coordinates
chrLK031804:-:1382058..1382483
Molecular Weight (calculated)
16211.7 Da
IEP (calculated)
11.595
GRAVY (calculated)
-0.604
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSMMETLQI RKPASLPVSQ RLSPSTKDEH GVIRRRLSSL SLNLLNQPSE IASRFPKSKS VSDMGKQVGS SVKEWWEWGW SWILSRKPIF IRDLELNREE
101: AKTIGSQNRG SIMHVFLKLR SRIRSLVGSS SDTLPKYKRQ Q
101: AKTIGSQNRG SIMHVFLKLR SRIRSLVGSS SDTLPKYKRQ Q
001: MSSMMETLQI RKPTSLPVSQ RPNAAATADD EPGLIRRRLS SLSLNLSNQP AAIAARFPRS KSVSAMGEQA GSSVKEWWEW GWSWILSRKP IFIRDLELNK
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
Arabidopsis Description
AT4g35320/F23E12_120 [Source:UniProtKB/TrEMBL;Acc:Q9ASZ6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.