Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P18190_001 | Banana | plastid | 75.9 | 59.15 |
| HORVU1Hr1G062730.1 | Barley | cytosol | 37.35 | 53.91 |
| Os02t0715300-01 | Rice | cytosol, mitochondrion, nucleus | 55.42 | 50.27 |
| TraesCS6D01G260100.1 | Wheat | nucleus | 51.81 | 47.51 |
| EES07366 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 53.61 | 46.84 |
| Zm00001d017837_P001 | Maize | nucleus | 53.61 | 46.6 |
| TraesCS6B01G308500.1 | Wheat | nucleus | 51.81 | 46.49 |
| TraesCS6A01G279700.1 | Wheat | nucleus | 51.2 | 45.95 |
| HORVU6Hr1G070290.1 | Barley | nucleus | 51.2 | 45.95 |
| Solyc01g112260.2.1 | Tomato | nucleus, plastid | 38.55 | 42.38 |
| Os08t0511400-01 | Rice | cytosol | 43.37 | 41.62 |
| KRH14006 | Soybean | cytosol, plastid | 29.52 | 39.2 |
| TraesCS7A01G247800.1 | Wheat | cytosol | 39.76 | 38.82 |
| KRH74108 | Soybean | plastid | 34.34 | 38.78 |
| TraesCS7D01G246500.1 | Wheat | cytosol, plastid | 39.16 | 38.24 |
| AT2G17300.1 | Thale cress | mitochondrion, plastid | 31.33 | 37.41 |
| VIT_03s0038g03980.t01 | Wine grape | plastid | 46.99 | 36.79 |
| Zm00001d031464_P001 | Maize | plastid | 34.34 | 34.97 |
| CDY66481 | Canola | plastid | 30.12 | 34.97 |
| CDX95195 | Canola | plastid | 30.12 | 34.97 |
| CDY52604 | Canola | plastid | 29.52 | 34.27 |
| Bra002049.1-P | Field mustard | plastid | 29.52 | 34.27 |
| CDX69130 | Canola | plastid | 28.92 | 33.57 |
| Zm00001d052898_P001 | Maize | plastid | 31.93 | 33.54 |
| CDX75494 | Canola | plastid | 28.31 | 33.33 |
| Bra011606.1-P | Field mustard | plastid | 28.31 | 33.33 |
| AT4G35320.1 | Thale cress | plastid | 29.52 | 33.33 |
| EES14260 | Sorghum | cytosol | 33.73 | 32.0 |
| HORVU7Hr1G050980.1 | Barley | mitochondrion | 40.36 | 28.88 |
| TraesCS7B01G143700.1 | Wheat | mitochondrion | 38.55 | 27.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P21850_001 | EnsemblPlants:GSMUA_Achr4T21850_001 | EnsemblPlantsGene:GSMUA_Achr4G21850_001 | PANTHER:PTHR35714 | SEG:seg | UniParc:UPI0002951CF0 |
| UniProt:M0SQZ8 | MapMan:35.2 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G21850_001]
Coordinates
chr4:-:22253760..22254581
Molecular Weight (calculated)
19500.3 Da
IEP (calculated)
10.411
GRAVY (calculated)
-0.686
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLFENVQK KRFFPTMPYK DELPTFQVQQ QQQDTHLIGL RKRISSFSVK IQPLSSVSTE WAIRRCKSMP SIGEFAGGPL RRWWGSWWGW ILSRKPVFAQ
101: DIEMNEEETA MLGWHSKGSW RHIFHRVRSE IRKLMRSNSL PTTQGFRYDS VGYAQNFDDG KPEELS
101: DIEMNEEETA MLGWHSKGSW RHIFHRVRSE IRKLMRSNSL PTTQGFRYDS VGYAQNFDDG KPEELS
001: MSSMMETLQI RKPTSLPVSQ RPNAAATADD EPGLIRRRLS SLSLNLSNQP AAIAARFPRS KSVSAMGEQA GSSVKEWWEW GWSWILSRKP IFIRDLELNK
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
Arabidopsis Description
AT4g35320/F23E12_120 [Source:UniProtKB/TrEMBL;Acc:Q9ASZ6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.