Factsheet for VIT_03s0038g03980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
peroxisome 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74108	Soybean	plastid	36.79	53.06
KRH14006	Soybean	cytosol, plastid	30.66	52.0
Solyc01g112260.2.1	Tomato	nucleus, plastid	36.79	51.66
GSMUA_Achr4P21850_001	Banana	nucleus	36.79	46.99
Bra011606.1-P	Field mustard	plastid	30.66	46.1
CDX75494	Canola	plastid	30.66	46.1
CDX69130	Canola	plastid	30.19	44.76
AT2G17300.1	Thale cress	mitochondrion, plastid	29.25	44.6
AT4G35320.1	Thale cress	plastid	29.72	42.86
CDY66481	Canola	plastid	27.36	40.56
CDX95195	Canola	plastid	27.36	40.56
Os02t0715300-01	Rice	cytosol, mitochondrion, nucleus	34.91	40.44
CDY52604	Canola	plastid	26.89	39.86
TraesCS7A01G247800.1	Wheat	cytosol	31.6	39.41
TraesCS6D01G260100.1	Wheat	nucleus	33.49	39.23
TraesCS7D01G246500.1	Wheat	cytosol, plastid	31.13	38.82
Os08t0511400-01	Rice	cytosol	31.6	38.73
EES07366	Sorghum	cytosol, mitochondrion, nucleus, plastid	34.43	38.42
TraesCS6B01G308500.1	Wheat	nucleus	33.49	38.38
Bra002049.1-P	Field mustard	plastid	25.47	37.76
Zm00001d017837_P001	Maize	nucleus	33.96	37.7
TraesCS6A01G279700.1	Wheat	nucleus	32.55	37.3
GSMUA_Achr4P18190_001	Banana	plastid	37.26	37.09
HORVU6Hr1G070290.1	Barley	nucleus	31.6	36.22
HORVU1Hr1G062730.1	Barley	cytosol	19.34	35.65
Zm00001d031464_P001	Maize	plastid	25.47	33.13
EES14260	Sorghum	cytosol	26.42	32.0
Zm00001d052898_P001	Maize	plastid	23.58	31.65
HORVU7Hr1G050980.1	Barley	mitochondrion	33.02	30.17
TraesCS7B01G143700.1	Wheat	mitochondrion	31.13	28.82

Protein Annotations

ArrayExpress:VIT_03s0038g03980	EMBL:AM437734	EMBL:FN596508	EnsemblPlants:VIT_03s0038g03980.t01	EnsemblPlantsGene:VIT_03s0038g03980	EntrezGene:100243457
EntrezGene:LOC100243457	PANTHER:PTHR35714	PANTHER:PTHR35714:SF1	ProteinID:CAN78386	ProteinID:CAN78386.1	ProteinID:CCB60523
ProteinID:CCB60523.1	RefSeq:XP_002283053	RefSeq:XP_002283053.1	TIGR:TC61745	unigene:Vvi.18818	UniParc:UPI000210A7DA
UniProt:F6I0Q7	wikigene:100243457	wikigene:LOC100243457	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3:-:2899718..2901764

Molecular Weight (calculated)

24783.3 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.666

Length

212 amino acids

Sequence
(BLAST)

001: MSSIFQSFKA NGLPVSHAES KEQGLRRRLS SFSFKIQPIC STPSSWRFPR SKSLPSMGEF GGSSMRKWWD LGWAWILSRK PTFAKDLEMN EEETVILGCH
101: NKGSWRHVFY KVRSELRRLV GSDRVGLPQT CRYDSYSYSQ NFDQGNTAIH DGKVGVSNFV FSWLRMYSYF VWFGGVREEE HANRLKRKEK VECLPAGNEV
201: DWWRNPNPMW HP

Best Arabidopsis Sequence Match ( AT4G35320.1 )
(BLAST)

001: MSSMMETLQI RKPTSLPVSQ RPNAAATADD EPGLIRRRLS SLSLNLSNQP AAIAARFPRS KSVSAMGEQA GSSVKEWWEW GWSWILSRKP IFIRDLELNK
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR

Arabidopsis Description

AT4g35320/F23E12_120 [Source:UniProtKB/TrEMBL;Acc:Q9ASZ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.