Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P21850_001 | Banana | nucleus | 59.15 | 75.9 |
| HORVU1Hr1G062730.1 | Barley | cytosol | 29.58 | 54.78 |
| Os02t0715300-01 | Rice | cytosol, mitochondrion, nucleus | 43.66 | 50.82 |
| TraesCS6D01G260100.1 | Wheat | nucleus | 40.85 | 48.07 |
| TraesCS6B01G308500.1 | Wheat | nucleus | 40.85 | 47.03 |
| TraesCS6A01G279700.1 | Wheat | nucleus | 40.38 | 46.49 |
| EES07366 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 41.31 | 46.32 |
| Solyc01g112260.2.1 | Tomato | nucleus, plastid | 32.39 | 45.7 |
| Zm00001d017837_P001 | Maize | nucleus | 40.85 | 45.55 |
| HORVU6Hr1G070290.1 | Barley | nucleus | 39.44 | 45.41 |
| KRH74108 | Soybean | plastid | 30.05 | 43.54 |
| KRH14006 | Soybean | cytosol, plastid | 24.41 | 41.6 |
| Os08t0511400-01 | Rice | cytosol | 33.33 | 41.04 |
| TraesCS7A01G247800.1 | Wheat | cytosol | 31.92 | 40.0 |
| TraesCS7D01G246500.1 | Wheat | cytosol, plastid | 31.46 | 39.41 |
| AT2G17300.1 | Thale cress | mitochondrion, plastid | 24.88 | 38.13 |
| VIT_03s0038g03980.t01 | Wine grape | plastid | 37.09 | 37.26 |
| CDX75494 | Canola | plastid | 24.41 | 36.88 |
| Bra011606.1-P | Field mustard | plastid | 24.41 | 36.88 |
| CDX69130 | Canola | plastid | 23.94 | 35.66 |
| Zm00001d031464_P001 | Maize | plastid | 26.76 | 34.97 |
| CDY66481 | Canola | plastid | 23.0 | 34.27 |
| CDX95195 | Canola | plastid | 23.0 | 34.27 |
| CDY52604 | Canola | plastid | 22.54 | 33.57 |
| Bra002049.1-P | Field mustard | plastid | 22.54 | 33.57 |
| AT4G35320.1 | Thale cress | plastid | 23.0 | 33.33 |
| EES14260 | Sorghum | cytosol | 27.23 | 33.14 |
| Zm00001d052898_P001 | Maize | plastid | 23.94 | 32.28 |
| HORVU7Hr1G050980.1 | Barley | mitochondrion | 34.74 | 31.9 |
| TraesCS7B01G143700.1 | Wheat | mitochondrion | 32.86 | 30.57 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P18190_001 | EnsemblPlants:GSMUA_Achr4T18190_001 | EnsemblPlantsGene:GSMUA_Achr4G18190_001 | PANTHER:PTHR35714 | SEG:seg | UniParc:UPI000294DAE9 |
| UniProt:M0SPY2 | MapMan:35.2 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G18190_001]
Coordinates
chr4:+:18851943..18852972
Molecular Weight (calculated)
24608.1 Da
IEP (calculated)
10.672
GRAVY (calculated)
-0.751
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKHNQPVNL AKSSPNRRLP FLLFSATKCT RTTQRSETRS SSSSLSPAST MGSLFEILQK KRFLPTMPYQ DDLPTFQAQK DTHLIGLRKR ISSYSVKIQP
101: LSTASSDWVF RKSKSMSSIG EFAGGPLRRW WDRWWGWVLS KKPAFAQDIE MNEEETALLG CHSKGSWQHI FYKLRSEARK LVRSNTTLPT TQGFRYDSFS
201: YAQNFDDGKR EEQ
101: LSTASSDWVF RKSKSMSSIG EFAGGPLRRW WDRWWGWVLS KKPAFAQDIE MNEEETALLG CHSKGSWQHI FYKLRSEARK LVRSNTTLPT TQGFRYDSFS
201: YAQNFDDGKR EEQ
001: MSSMMETLQI RKPTSLPVSQ RPNAAATADD EPGLIRRRLS SLSLNLSNQP AAIAARFPRS KSVSAMGEQA GSSVKEWWEW GWSWILSRKP IFIRDLELNK
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
Arabidopsis Description
AT4g35320/F23E12_120 [Source:UniProtKB/TrEMBL;Acc:Q9ASZ6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.