Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G279700.1 | Wheat | nucleus | 88.65 | 88.65 |
| TraesCS6B01G308500.1 | Wheat | nucleus | 87.03 | 87.03 |
| TraesCS6D01G260100.1 | Wheat | nucleus | 81.08 | 82.87 |
| HORVU1Hr1G062730.1 | Barley | cytosol | 49.73 | 80.0 |
| Os02t0715300-01 | Rice | cytosol, mitochondrion, nucleus | 72.43 | 73.22 |
| EES07366 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 73.51 | 71.58 |
| Zm00001d017837_P001 | Maize | nucleus | 73.51 | 71.2 |
| GSMUA_Achr4P21850_001 | Banana | nucleus | 45.95 | 51.2 |
| GSMUA_Achr4P18190_001 | Banana | plastid | 45.41 | 39.44 |
| KRH14006 | Soybean | cytosol, plastid | 26.49 | 39.2 |
| KRH74108 | Soybean | plastid | 29.73 | 37.41 |
| Solyc01g112260.2.1 | Tomato | nucleus, plastid | 30.27 | 37.09 |
| CDX75494 | Canola | plastid | 25.41 | 33.33 |
| Bra011606.1-P | Field mustard | plastid | 25.41 | 33.33 |
| CDX69130 | Canola | plastid | 24.86 | 32.17 |
| AT2G17300.1 | Thale cress | mitochondrion, plastid | 23.78 | 31.65 |
| VIT_03s0038g03980.t01 | Wine grape | plastid | 36.22 | 31.6 |
| AT4G35320.1 | Thale cress | plastid | 24.86 | 31.29 |
| CDY66481 | Canola | plastid | 22.16 | 28.67 |
| CDY52604 | Canola | plastid | 22.16 | 28.67 |
| CDX95195 | Canola | plastid | 22.16 | 28.67 |
| Bra002049.1-P | Field mustard | plastid | 22.16 | 28.67 |
| HORVU7Hr1G050980.1 | Barley | mitochondrion | 35.68 | 28.45 |
Protein Annotations
| EMBL:AK359039 | EMBL:AK368052 | EnsemblPlants:HORVU6Hr1G070290.1 | EnsemblPlantsGene:HORVU6Hr1G070290 | PANTHER:PTHR35714 | PANTHER:PTHR35714:SF1 |
| SEG:seg | UniParc:UPI0002005B8C | UniProt:F2D579 | MapMan:35.2 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D579]
Coordinates
chrchr6H:-:488845871..488847803
Molecular Weight (calculated)
20530.4 Da
IEP (calculated)
10.898
GRAVY (calculated)
-0.556
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MATILENIQK ARFLPTRPLR DDLPTFQGGG GKEEESHLMG LRKRLSSFSG KIQPISSASA EWAIRRTRSA PSLAAEFAAG PLKRWWDWGV GWLLSRKLAD
101: DLEMNEEEAA ALGRQSRGTW AHALYKLRSS VRRLVASDHS LPTTHRRKGA SSLPAASSAH HHCKPAAPQF AYTQSFQQYG QAMAH
101: DLEMNEEEAA ALGRQSRGTW AHALYKLRSS VRRLVASDHS LPTTHRRKGA SSLPAASSAH HHCKPAAPQF AYTQSFQQYG QAMAH
001: MSSMMETLQI RKPTSLPVSQ RPNAAATADD EPGLIRRRLS SLSLNLSNQP AAIAARFPRS KSVSAMGEQA GSSVKEWWEW GWSWILSRKP IFIRDLELNK
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
Arabidopsis Description
AT4g35320/F23E12_120 [Source:UniProtKB/TrEMBL;Acc:Q9ASZ6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.