Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95195 | Canola | plastid | 82.73 | 80.42 |
| CDY66481 | Canola | plastid | 82.73 | 80.42 |
| CDY52604 | Canola | plastid | 82.01 | 79.72 |
| Bra002049.1-P | Field mustard | plastid | 79.86 | 77.62 |
| AT4G35320.1 | Thale cress | plastid | 71.22 | 67.35 |
| KRH14006 | Soybean | cytosol, plastid | 43.17 | 48.0 |
| KRH74108 | Soybean | plastid | 46.76 | 44.22 |
| Solyc01g112260.2.1 | Tomato | nucleus, plastid | 37.41 | 34.44 |
| GSMUA_Achr4P21850_001 | Banana | nucleus | 37.41 | 31.33 |
| VIT_03s0038g03980.t01 | Wine grape | plastid | 44.6 | 29.25 |
| TraesCS7A01G247800.1 | Wheat | cytosol | 34.53 | 28.24 |
| EES07366 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 38.13 | 27.89 |
| Zm00001d017837_P001 | Maize | nucleus | 38.13 | 27.75 |
| TraesCS7D01G246500.1 | Wheat | cytosol, plastid | 33.81 | 27.65 |
| Os02t0715300-01 | Rice | cytosol, mitochondrion, nucleus | 35.97 | 27.32 |
| TraesCS6D01G260100.1 | Wheat | nucleus | 33.81 | 25.97 |
| TraesCS6A01G279700.1 | Wheat | nucleus | 34.53 | 25.95 |
| HORVU1Hr1G062730.1 | Barley | cytosol | 20.86 | 25.22 |
| GSMUA_Achr4P18190_001 | Banana | plastid | 38.13 | 24.88 |
| TraesCS6B01G308500.1 | Wheat | nucleus | 33.09 | 24.86 |
| Os08t0511400-01 | Rice | cytosol | 30.94 | 24.86 |
| HORVU6Hr1G070290.1 | Barley | nucleus | 31.65 | 23.78 |
| Zm00001d031464_P001 | Maize | plastid | 27.34 | 23.31 |
| EES14260 | Sorghum | cytosol | 28.06 | 22.29 |
| HORVU7Hr1G050980.1 | Barley | mitochondrion | 35.97 | 21.55 |
| Zm00001d052898_P001 | Maize | plastid | 24.46 | 21.52 |
| TraesCS7B01G143700.1 | Wheat | mitochondrion | 33.81 | 20.52 |
Protein Annotations
| MapMan:35.2 | EntrezGene:816236 | ProteinID:AEC06610.1 | ArrayExpress:AT2G17300 | EnsemblPlantsGene:AT2G17300 | RefSeq:AT2G17300 |
| TAIR:AT2G17300 | RefSeq:AT2G17300-TAIR-G | EnsemblPlants:AT2G17300.1 | TAIR:AT2G17300.1 | EMBL:BT011761 | EMBL:BT012383 |
| GO:GO:0008150 | RefSeq:NP_179322.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 |
| PANTHER:PTHR35714 | PANTHER:PTHR35714:SF1 | UniProt:Q6NLF1 | UniParc:UPI0000052A05 | SEG:seg | : |
Description
At2g17300 [Source:UniProtKB/TrEMBL;Acc:Q6NLF1]
Coordinates
chr2:-:7522050..7523177
Molecular Weight (calculated)
15880.1 Da
IEP (calculated)
11.423
GRAVY (calculated)
-0.568
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSIMKTLQ IRKPTSLPIS STTTDEPGLL RRRLSSLSLN LSRNQPSTVS RSKSVSDMGE QGGSSVKEWW EWSWSWILLK KLPIFFTDLE VNKNETKSSL
101: GNQQRGSFIH VFFKLRSEIR RLLRPSSDSL PLSCKHGQR
101: GNQQRGSFIH VFFKLRSEIR RLLRPSSDSL PLSCKHGQR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.