Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95195 | Canola | plastid | 99.3 | 99.3 |
| CDY66481 | Canola | plastid | 99.3 | 99.3 |
| Bra002049.1-P | Field mustard | plastid | 97.2 | 97.2 |
| AT2G17300.1 | Thale cress | mitochondrion, plastid | 79.72 | 82.01 |
| CDX75494 | Canola | plastid | 55.24 | 56.03 |
| CDX69130 | Canola | plastid | 55.24 | 55.24 |
| KRH14006 | Soybean | cytosol, plastid | 40.56 | 46.4 |
| KRH74108 | Soybean | plastid | 41.96 | 40.82 |
| Solyc01g112260.2.1 | Tomato | nucleus, plastid | 32.17 | 30.46 |
| GSMUA_Achr4P21850_001 | Banana | nucleus | 34.27 | 29.52 |
| VIT_03s0038g03980.t01 | Wine grape | plastid | 39.86 | 26.89 |
| TraesCS7A01G247800.1 | Wheat | cytosol | 30.07 | 25.29 |
| Zm00001d017837_P001 | Maize | nucleus | 33.57 | 25.13 |
| Os08t0511400-01 | Rice | cytosol | 30.07 | 24.86 |
| TraesCS7D01G246500.1 | Wheat | cytosol, plastid | 29.37 | 24.71 |
| Os02t0715300-01 | Rice | cytosol, mitochondrion, nucleus | 31.47 | 24.59 |
| EES07366 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 32.17 | 24.21 |
| TraesCS6A01G279700.1 | Wheat | nucleus | 30.77 | 23.78 |
| TraesCS6D01G260100.1 | Wheat | nucleus | 30.07 | 23.76 |
| HORVU1Hr1G062730.1 | Barley | cytosol | 18.88 | 23.48 |
| TraesCS6B01G308500.1 | Wheat | nucleus | 29.37 | 22.7 |
| Zm00001d031464_P001 | Maize | plastid | 25.87 | 22.7 |
| GSMUA_Achr4P18190_001 | Banana | plastid | 33.57 | 22.54 |
| HORVU6Hr1G070290.1 | Barley | nucleus | 28.67 | 22.16 |
| Zm00001d052898_P001 | Maize | plastid | 24.48 | 22.15 |
| EES14260 | Sorghum | cytosol | 25.87 | 21.14 |
| HORVU7Hr1G050980.1 | Barley | mitochondrion | 31.47 | 19.4 |
| TraesCS7B01G143700.1 | Wheat | mitochondrion | 30.07 | 18.78 |
Protein Annotations
| EnsemblPlants:CDY52604 | EnsemblPlantsGene:GSBRNA2T00007384001 | PANTHER:PTHR35714 | PANTHER:PTHR35714:SF1 | ProteinID:CDY52604 | ProteinID:CDY52604.1 |
| SEG:seg | UniParc:UPI0004EBC86B | UniProt:A0A078IT52 | MapMan:35.2 | : | : |
Description
BnaCnng22830DBnaCnng22830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT52]
Coordinates
chrLK033107:-:77807..78553
Molecular Weight (calculated)
16191.3 Da
IEP (calculated)
11.478
GRAVY (calculated)
-0.548
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSIMKTLQ IRKPASLPVS STTTADANEP GLLRRRLSSL SLNLSRNQPS TDDLHRSKSV SAMGEQRGSS SVKEWWEWSW SLILLKKLPV FFTDLEFNEN
101: QTKSSLGNQQ RGGFAQVFFR LRSEIRRLLR TSSSDSLPLS CNR
101: QTKSSLGNQQ RGGFAQVFFR LRSEIRRLLR TSSSDSLPLS CNR
001: MSSSIMKTLQ IRKPTSLPIS STTTDEPGLL RRRLSSLSLN LSRNQPSTVS RSKSVSDMGE QGGSSVKEWW EWSWSWILLK KLPIFFTDLE VNKNETKSSL
101: GNQQRGSFIH VFFKLRSEIR RLLRPSSDSL PLSCKHGQR
101: GNQQRGSFIH VFFKLRSEIR RLLRPSSDSL PLSCKHGQR
Arabidopsis Description
At2g17300 [Source:UniProtKB/TrEMBL;Acc:Q6NLF1]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.