Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G308500.1 | Wheat | nucleus | 87.29 | 85.41 |
| TraesCS6A01G279700.1 | Wheat | nucleus | 87.29 | 85.41 |
| HORVU1Hr1G062730.1 | Barley | cytosol | 52.49 | 82.61 |
| HORVU6Hr1G070290.1 | Barley | nucleus | 82.87 | 81.08 |
| Os02t0715300-01 | Rice | cytosol, mitochondrion, nucleus | 75.14 | 74.32 |
| Zm00001d017837_P001 | Maize | nucleus | 72.38 | 68.59 |
| EES07366 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 71.82 | 68.42 |
| GSMUA_Achr4P21850_001 | Banana | nucleus | 47.51 | 51.81 |
| GSMUA_Achr4P18190_001 | Banana | plastid | 48.07 | 40.85 |
| Solyc01g112260.2.1 | Tomato | nucleus, plastid | 33.7 | 40.4 |
| KRH14006 | Soybean | cytosol, plastid | 27.62 | 40.0 |
| TraesCS7D01G246500.1 | Wheat | cytosol, plastid | 37.02 | 39.41 |
| KRH74108 | Soybean | plastid | 30.94 | 38.1 |
| CDX75494 | Canola | plastid | 27.07 | 34.75 |
| Bra011606.1-P | Field mustard | plastid | 27.07 | 34.75 |
| AT2G17300.1 | Thale cress | mitochondrion, plastid | 25.97 | 33.81 |
| CDX69130 | Canola | plastid | 26.52 | 33.57 |
| VIT_03s0038g03980.t01 | Wine grape | plastid | 39.23 | 33.49 |
| AT4G35320.1 | Thale cress | plastid | 26.52 | 32.65 |
| CDY66481 | Canola | plastid | 23.76 | 30.07 |
| CDY52604 | Canola | plastid | 23.76 | 30.07 |
| CDX95195 | Canola | plastid | 23.76 | 30.07 |
| Bra002049.1-P | Field mustard | plastid | 23.76 | 30.07 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G260100.1 | EnsemblPlantsGene:TraesCS6D01G260100 | PANTHER:PTHR35714 | PANTHER:PTHR35714:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6D:+:366684562..366685107
Molecular Weight (calculated)
20223.1 Da
IEP (calculated)
10.829
GRAVY (calculated)
-0.548
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MATILENIQK ARFLPTRPLR DDLPTFQGGK EEESHLMGLR KRLSSFSGKI QPISSASAEW AFRRTRSAPS LAAEFAGGPL KRWWDWGLGW LLSKKLGFAG
101: DLEMNEEEAA ALGRQSRGTW AHVLYKVRSG VRRLVASDHS LPTTHHRKAS LPPSSSAHQH CKPAPQFAYT QSFQYGQAMA H
101: DLEMNEEEAA ALGRQSRGTW AHVLYKVRSG VRRLVASDHS LPTTHHRKAS LPPSSSAHQH CKPAPQFAYT QSFQYGQAMA H
001: MSSMMETLQI RKPTSLPVSQ RPNAAATADD EPGLIRRRLS SLSLNLSNQP AAIAARFPRS KSVSAMGEQA GSSVKEWWEW GWSWILSRKP IFIRDLELNK
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
101: DEAKSIGSQN RGSIMHVFFK LRSQIRNFMG PSSEDSLPLS CKYKRQR
Arabidopsis Description
AT4g35320/F23E12_120 [Source:UniProtKB/TrEMBL;Acc:Q9ASZ6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.