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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:extracellular, plastid, vacuole
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:extracellular
Predotar:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:vacuole
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68365
CDX77855
CDX86045
CDX89402
CDX89404
CDX94426
CDX94429
CDX99131
CDY06543
CDY30926
CDY39001
CDY41713
CDY49480
CDY52126
CDY59269
CDY65544
CDY66007
CDY67905
CDY71506

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G07110.1 CDY39001 AT1G56330.1 21798944
AT5G07110.1 CDY41713 AT1G56330.1 21798944
AT5G07110.1 CDY59269 AT1G56330.1 21798944
AT5G07110.1 CDY65544 AT1G56330.1 21798944
AT5G07110.1 CDX68365 AT3G46060.1 21798944
AT5G07110.1 CDX77855 AT3G46060.1 21798944
AT5G07110.1 CDX86045 AT3G46060.1 21798944
AT5G07110.1 CDX99131 AT3G46060.1 21798944
AT5G07110.1 CDY30926 AT3G46060.1 21798944
AT5G07110.1 CDY71506 AT3G46060.1 21798944
AT5G07110.1 CDX89402 AT4G25660.1 21798944
AT5G07110.1 CDX89404 AT4G25660.1 21798944
AT5G07110.1 CDX94426 AT4G25660.1 21798944
AT5G07110.1 CDX94429 AT4G25660.1 21798944
AT5G07110.1 CDY49480 AT4G25660.1 21798944
AT5G07110.1 CDY66007 AT4G25660.1 21798944
AT5G07110.1 CDX89402 AT4G25680.1 21798944
AT5G07110.1 CDX89404 AT4G25680.1 21798944
AT5G07110.1 CDX94426 AT4G25680.1 21798944
AT5G07110.1 CDX94429 AT4G25680.1 21798944
AT5G07110.1 CDY49480 AT4G25680.1 21798944
AT5G07110.1 CDY66007 AT4G25680.1 21798944
AT5G07110.1 CDY06543 AT5G56020.1 21798944
AT5G07110.1 CDY52126 AT5G58750.1 21798944
AT5G07110.1 CDY67905 AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY58876 Canola plastid 96.79 96.79
AT5G07110.1 Thale cress plastid 85.78 86.57
CDX72173 Canola plastid 50.0 53.69
CDY27245 Canola plastid 50.0 53.69
CDX67633 Canola plastid 51.83 53.55
CDY18870 Canola plastid 50.92 53.11
CDX74794 Canola plastid 51.38 52.58
CDY31997 Canola plastid 50.46 52.38
CDX70153 Canola plastid 51.38 52.09
CDX80758 Canola plastid 49.54 50.47
CDY63156 Canola plastid 48.62 48.62
CDY07736 Canola plastid 47.25 46.4
CDY41253 Canola plastid 16.97 43.02
CDY05662 Canola plastid 14.22 42.47
CDY25186 Canola plastid 16.51 41.86
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 34.86 41.76
CDY61529 Canola plastid 23.39 40.48
CDY51735 Canola plasma membrane 27.52 32.97
CDY37483 Canola plasma membrane 27.52 32.97
CDY33064 Canola cytosol, plasma membrane, plastid 27.06 31.55
CDY26125 Canola cytosol, plasma membrane, plastid 27.06 31.22
CDY24050 Canola cytosol, plasma membrane, plastid 26.15 30.48
CDY51077 Canola cytosol, endoplasmic reticulum, plasma membrane 25.69 30.27
CDY17405 Canola plastid 26.61 30.21
CDY08228 Canola plasma membrane 26.15 30.16
CDY50022 Canola cytosol, endoplasmic reticulum, plasma membrane 25.69 30.11
CDX97509 Canola plasma membrane 24.77 29.83
CDY32804 Canola plastid 25.69 29.79
CDY23634 Canola plasma membrane 24.31 29.28
CDX93539 Canola plastid 27.52 28.85
CDX86646 Canola plasma membrane 23.39 28.65
CDY15494 Canola plasma membrane 23.39 28.65
CDY26225 Canola plasma membrane 23.85 28.26
CDX81845 Canola plasma membrane 23.39 28.18
CDX95035 Canola plastid 26.61 27.88
CDY43514 Canola mitochondrion 22.02 27.43
CDY06788 Canola plastid 24.31 27.32
CDY59501 Canola plasma membrane 22.94 27.17
CDY51734 Canola plastid 21.56 22.49
CDY37482 Canola plastid 21.56 22.49
CDY51733 Canola plastid 21.1 21.5
CDY55133 Canola plasma membrane 20.64 21.13
Protein Annotations
EnsemblPlants:CDX81033EnsemblPlantsGene:GSBRNA2T00134467001GO:A0A078D155InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF34
PFAM:PF03208ProteinID:CDX81033ProteinID:CDX81033.1SEG:segTMHMM:TMhelixUniParc:UPI0004EAC27B
MapMan:22.8.4.3.2:::::
Description
BnaC03g02870D
Coordinates
chrLK031823:+:1393193..1393849
Molecular Weight (calculated)
23455.5 Da
IEP (calculated)
8.247
GRAVY (calculated)
0.434
Length
218 amino acids
Sequence
(BLAST)
001: MASPLLPTST SPDHLPTGGN DPPLLSSLRV LFSRVLSSAR HATSDARPWA ELIDRSAFSR PPSLSEAASR VRKNFSYFKS NYITLVAFLL AASLLSHPFA
101: LFLLASLAAS WLFLYVFRPS DQPLVIGGRT FSDLETLGML CLCTVVVMFM TSVGSLLMST LALGMMAVAV HGAFRAPEDL FLEEQETIGS GLFNFFNQNA
201: TNAAAAAIAT SAMSRVRA
Best Arabidopsis Sequence Match ( AT5G07110.1 )
(BLAST)
001: MASPLLPTST TPDQLPGGDP QLLSSLRVLL SRVLATVRHA SADARPWAEL VDRSAFSRPP SLSEATSRVR KNFSYFRANY ITLVAILLAA SLLTHPFALF
101: LLASLAASWL FLYFFRPADQ PLVIGGRTFS DLETLGILCL STVVVMFMTS VGSLLMSTLA VGIMGVAIHG AFRAPEDLFL EEQEAIGSGL FAFFNNNASN
201: AAAAAIATSA MSRVRV
Arabidopsis Description
PRA1B6PRA1 family protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYQ4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.