Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030561.1-P | Field mustard | plasma membrane | 98.31 | 98.31 |
| CDY15494 | Canola | plasma membrane | 98.31 | 98.31 |
| AT1G04260.1 | Thale cress | plasma membrane | 84.83 | 82.97 |
| KRH34380 | Soybean | cytosol, plastid | 42.7 | 44.97 |
| Solyc09g083320.1.1 | Tomato | plasma membrane | 33.71 | 35.71 |
| PGSC0003DMT400015659 | Potato | plasma membrane | 33.15 | 35.12 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 33.15 | 31.55 |
| CDY26225 | Canola | plasma membrane | 32.58 | 31.52 |
| CDX81845 | Canola | plasma membrane | 32.02 | 31.49 |
| CDX93539 | Canola | plastid | 36.52 | 31.25 |
| CDY59501 | Canola | plasma membrane | 32.02 | 30.98 |
| CDY51735 | Canola | plasma membrane | 31.46 | 30.77 |
| CDY37483 | Canola | plasma membrane | 31.46 | 30.77 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 32.02 | 30.16 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 31.46 | 29.95 |
| CDX95035 | Canola | plastid | 34.83 | 29.81 |
| CDY23634 | Canola | plasma membrane | 29.78 | 29.28 |
| CDX97509 | Canola | plasma membrane | 29.78 | 29.28 |
| CDY43514 | Canola | mitochondrion | 28.65 | 29.14 |
| CDY51077 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 29.21 | 28.11 |
| CDY08228 | Canola | plasma membrane | 29.78 | 28.04 |
| CDY61529 | Canola | plastid | 19.66 | 27.78 |
| CDY06788 | Canola | plastid | 29.78 | 27.32 |
| CDY50022 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 28.09 | 26.88 |
| CDX70153 | Canola | plastid | 31.46 | 26.05 |
| CDX72173 | Canola | plastid | 29.21 | 25.62 |
| CDY27245 | Canola | plastid | 29.21 | 25.62 |
| CDY32804 | Canola | plastid | 26.97 | 25.53 |
| CDX80758 | Canola | plastid | 30.34 | 25.23 |
| CDY17405 | Canola | plastid | 26.4 | 24.48 |
| CDY58876 | Canola | plastid | 29.21 | 23.85 |
| CDX74794 | Canola | plastid | 28.09 | 23.47 |
| CDY18870 | Canola | plastid | 27.53 | 23.45 |
| CDY07736 | Canola | plastid | 29.21 | 23.42 |
| CDX81033 | Canola | plastid | 28.65 | 23.39 |
| CDY31997 | Canola | plastid | 27.53 | 23.33 |
| CDY63156 | Canola | plastid | 28.09 | 22.94 |
| CDX67633 | Canola | plastid | 26.4 | 22.27 |
| CDY37482 | Canola | plastid | 24.72 | 21.05 |
| CDY25186 | Canola | plastid | 10.11 | 20.93 |
| CDY51734 | Canola | plastid | 24.16 | 20.57 |
| CDY41253 | Canola | plastid | 9.55 | 19.77 |
| CDY55133 | Canola | plasma membrane | 23.03 | 19.25 |
| CDY05662 | Canola | plastid | 7.87 | 19.18 |
| CDY51733 | Canola | plastid | 23.03 | 19.16 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 18.54 | 18.13 |
Protein Annotations
| EnsemblPlants:CDX86646 | EnsemblPlantsGene:GSBRNA2T00145312001 | GO:A0A078DBK6 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF5 |
| PFAM:PF03208 | ProteinID:CDX86646 | ProteinID:CDX86646.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF361B |
| MapMan:22.8.4.3.2 | : | : | : | : | : |
Description
BnaC08g00570D
Coordinates
chrLK031846:+:1322774..1323414
Molecular Weight (calculated)
18947.0 Da
IEP (calculated)
4.169
GRAVY (calculated)
0.778
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQVISGIK ETVQSINGAA RPWGDFLDLS AFSFPSSFSD ATTRLTQNLA HFRINYTIIL SVLLALTLIT RPIAILAFVA VGLAWFFLYF AREEALTVFG
101: FTVDDGVVAV LLIVLTIAAL VTTGVWLSAL TTVGFGALVL ILHAALRGTE DLVTDDLESP YGPMLSTAGG DNGDYSGI
101: FTVDDGVVAV LLIVLTIAAL VTTGVWLSAL TTVGFGALVL ILHAALRGTE DLVTDDLESP YGPMLSTAGG DNGDYSGI
001: MANQVITGIK ETAQSITGAA RPWGDFLDLS AFSFPSSIAD ATTRVTQNLT HFRINYSIIL SILLGLTLIT RPIAILAFIA VGLAWFFLYF AREEPLTIFG
101: FTIDDGIVAV LLIGLSIGSL VTTGVWLRAL TTVGFGVLVL ILHAALRGTD DLVSDDLESP YGPMLSTSGG GNDGARGDYS GI
101: FTIDDGIVAV LLIGLSIGSL VTTGVWLRAL TTVGFGVLVL ILHAALRGTD DLVSDDLESP YGPMLSTSGG GNDGARGDYS GI
Arabidopsis Description
PRA1DPRA1 family protein D [Source:UniProtKB/Swiss-Prot;Acc:P93829]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.