Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g083320.1.1 | Tomato | plasma membrane | 95.83 | 95.83 |
| PGSC0003DMT400038994 | Potato | mitochondrion, plastid | 38.1 | 36.36 |
| KRH34380 | Soybean | cytosol, plastid | 35.12 | 34.91 |
| Bra030561.1-P | Field mustard | plasma membrane | 35.12 | 33.15 |
| CDX86646 | Canola | plasma membrane | 35.12 | 33.15 |
| CDY15494 | Canola | plasma membrane | 35.12 | 33.15 |
| AT1G04260.1 | Thale cress | plasma membrane | 34.52 | 31.87 |
| PGSC0003DMT400050026 | Potato | plastid | 38.1 | 29.77 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 32.14 | 29.67 |
| PGSC0003DMT400056954 | Potato | plasma membrane | 30.36 | 27.27 |
| PGSC0003DMT400034320 | Potato | plastid | 32.14 | 25.47 |
| PGSC0003DMT400041063 | Potato | plastid | 33.33 | 24.56 |
| PGSC0003DMT400061546 | Potato | plastid | 30.95 | 23.85 |
Protein Annotations
| EntrezGene:102593545 | MapMan:22.8.4.3.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 |
| UniProt:M1A6C9 | PFAM:PF03208 | EnsemblPlantsGene:PGSC0003DMG400006110 | PGSC:PGSC0003DMG400006110 | EnsemblPlants:PGSC0003DMT400015659 | PANTHER:PTHR19317 |
| PANTHER:PTHR19317:SF33 | InterPro:Prenylated_rab_accept_PRA1 | TMHMM:TMhelix | UniParc:UPI000294EA3C | RefSeq:XP_006362196.1 | SEG:seg |
Description
PRA1 family protein D [Source:PGSC_GENE;Acc:PGSC0003DMG400006110]
Coordinates
chr9:-:55392962..55393758
Molecular Weight (calculated)
18597.1 Da
IEP (calculated)
4.524
GRAVY (calculated)
0.863
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPPPDAGT VAVVTVRPWP LFIDTAALSL PISVSDATYR INKNLRYFAG NYALIILSIL LISLIVQPIL LVLFLIIFVG WIYLYFSRNE PLELFGFDID
101: DKFVLGFLTL VTLVALLVAK IWMNIFVSIG FGIVIMCVHG ALRAPEDQED SPYGALLSES PRGNYSIV
101: DKFVLGFLTL VTLVALLVAK IWMNIFVSIG FGIVIMCVHG ALRAPEDQED SPYGALLSES PRGNYSIV
001: MANQVITGIK ETAQSITGAA RPWGDFLDLS AFSFPSSIAD ATTRVTQNLT HFRINYSIIL SILLGLTLIT RPIAILAFIA VGLAWFFLYF AREEPLTIFG
101: FTIDDGIVAV LLIGLSIGSL VTTGVWLRAL TTVGFGVLVL ILHAALRGTD DLVSDDLESP YGPMLSTSGG GNDGARGDYS GI
101: FTIDDGIVAV LLIGLSIGSL VTTGVWLRAL TTVGFGVLVL ILHAALRGTD DLVSDDLESP YGPMLSTSGG GNDGARGDYS GI
Arabidopsis Description
PRA1DPRA1 family protein D [Source:UniProtKB/Swiss-Prot;Acc:P93829]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.