Factsheet for PGSC0003DMT400041063

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008917
PGSC0003DMT400011821
PGSC0003DMT400018924
PGSC0003DMT400032086
PGSC0003DMT400034320
PGSC0003DMT400040138
PGSC0003DMT400041063
PGSC0003DMT400061546
PGSC0003DMT400080258

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	PGSC0003DMT400008917	AT3G46060.1	21798944
AT2G38360.1	PGSC0003DMT400040138	AT3G46060.1	21798944
AT5G01640.1	PGSC0003DMT400061546	AT2G40380.1	21798944
AT5G01640.1	PGSC0003DMT400018924	AT4G25660.1	21798944
AT5G01640.1	PGSC0003DMT400034320	AT5G01640.1	21798944
AT5G01640.1	PGSC0003DMT400041063	AT5G01640.1	21798944
AT5G01640.1	PGSC0003DMT400011821	AT5G12390.1	21798944
AT5G01640.1	PGSC0003DMT400080258	AT5G12390.1	21798944
AT5G01640.1	PGSC0003DMT400032086	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076360.1.1	Tomato	plastid	96.05	97.77
PGSC0003DMT400034320	Potato	plastid	73.68	79.25
AT2G38360.1	Thale cress	plastid	63.16	65.45
Bra000056.1-P	Field mustard	plastid	63.16	64.86
CDY07736	Canola	plastid	62.28	63.96
KRH76033	Soybean	endoplasmic reticulum	60.96	63.47
PGSC0003DMT400061546	Potato	plastid	60.09	62.84
CDY63156	Canola	plastid	60.09	62.84
KRH65569	Soybean	plastid	60.96	61.23
KRG93818	Soybean	extracellular, plasma membrane, vacuole	22.37	60.71
AT5G01640.1	Thale cress	plastid	57.46	58.74
GSMUA_Achr5P07440_001	Banana	plastid	54.82	58.14
AT4G00005.1	Thale cress	extracellular, plasma membrane	29.82	57.63
GSMUA_Achr5P14320_001	Banana	plastid	46.93	57.22
GSMUA_Achr10P...	Banana	plastid	45.61	57.14
GSMUA_Achr4P18690_001	Banana	plastid	55.26	57.01
CDX80758	Canola	plastid	53.51	57.01
GSMUA_Achr3P10010_001	Banana	plastid	53.95	56.94
GSMUA_Achr7P22310_001	Banana	plastid	46.93	56.91
Bra005112.1-P	Field mustard	plastid	39.91	54.17
Os12t0107600-00	Rice	plastid	50.88	52.73
Os11t0107600-01	Rice	plastid	50.44	52.27
KXG22202	Sorghum	plastid	49.12	51.61
KRH32827	Soybean	plastid	50.88	51.33
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	40.79	51.1
Zm00001d010603_P002	Maize	mitochondrion	47.81	50.23
Os05t0474400-01	Rice	plasma membrane, vacuole	48.25	50.0
KRH00333	Soybean	plastid	49.12	49.34
HORVU4Hr1G024530.1	Barley	plastid	48.68	49.12
Os01t0827400-01	Rice	extracellular, mitochondrion, plasma membrane	31.14	48.97
TraesCS4D01G132000.1	Wheat	plastid	48.68	48.9
TraesCS4B01G137300.1	Wheat	plastid	48.68	48.9
KRH49465	Soybean	plastid	47.81	48.88
TraesCS1B01G307400.1	Wheat	golgi, unclear	46.93	48.64
TraesCS1D01G293300.1	Wheat	plastid	46.93	48.42
TraesCS1A01G297900.1	Wheat	plastid	46.93	48.42
TraesCS4A01G180500.1	Wheat	plastid	48.25	48.25
HORVU1Hr1G070360.1	Barley	plastid	46.93	48.2
TraesCS3A01G348100.1	Wheat	plastid	44.3	47.64
CDY61529	Canola	plastid	26.32	47.62
TraesCS3B01G380000.1	Wheat	plastid	44.3	47.42
TraesCS5B01G150200.1	Wheat	plastid	46.93	47.35
TraesCS3D01G341700.1	Wheat	plastid	45.61	47.06
Zm00001d052322_P001	Maize	plastid	38.6	46.56
EES03822	Sorghum	plastid	45.18	46.19
TraesCS5A01G151600.1	Wheat	plastid	45.61	46.02
TraesCS5D01G156800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.61	46.02
OQU82692	Sorghum	plastid	45.18	45.98
HORVU3Hr1G088130.1	Barley	plastid	44.3	45.91
EES15518	Sorghum	plastid	45.61	44.64
Zm00001d043018_P001	Maize	mitochondrion	42.98	44.55
HORVU5Hr1G047520.1	Barley	endoplasmic reticulum, plastid	45.61	42.98
PGSC0003DMT400006409	Potato	plasma membrane	32.89	41.21
HORVU2Hr1G086930.1	Barley	cytosol, plastid	20.18	41.07
KXG38626	Sorghum	golgi, plasma membrane, plastid	30.7	37.84
PGSC0003DMT400038994	Potato	mitochondrion, plastid	28.95	37.5
PGSC0003DMT400056954	Potato	plasma membrane	28.07	34.22
PGSC0003DMT400015659	Potato	plasma membrane	24.56	33.33
PGSC0003DMT400050026	Potato	plastid	29.82	31.63
OQU79263	Sorghum	plastid	21.49	29.7

Protein Annotations

EnsemblPlants:PGSC0003DMT400041063	EnsemblPlantsGene:PGSC0003DMG400015888	EntrezGene:102591195	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	PGSC:PGSC0003DMG400015888	RefSeq:XP_006363615.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002967A71	UniProt:M1BAV1	MapMan:22.8.4.3.2	:

Description

Prenylated Rab acceptor protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015888]

Coordinates

chr10:+:49584142..49585206

Molecular Weight (calculated)

24354.5 Da

IEP (calculated)

8.470

GRAVY (calculated)

0.464

Length

228 amino acids

Sequence
(BLAST)

001: MATASPTPVL PISNPQTTTT TVAATTTTTD TQQTITGVGP TPALRSFINR VSETVQGGLS NRRPWAELVD RSAFAKPESV SDATLRIRKN YSYFRTNYLS
101: LLAVVLAFSL ITNPFSLILL TGLLAAWLFL YLFRPSDPPL VLFGRQFSER ETLGVLIVST VVVIFLTSVG SVLVSALMIG LAIVCTHAAF RVPEDLFLDD
201: QESPATGFLS FLAGAAPTSG PAAVSARV

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.