Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 5
- cytosol 1
- plasma membrane 2
- vacuole 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G38360.1 | EER93195 | AT3G46060.1 | 21798944 |
| AT2G38360.1 | EES19652 | AT3G46060.1 | 21798944 |
| AT2G38360.1 | OQU88745 | AT3G46060.1 | 21798944 |
| AT5G01640.1 | EER87703 | AT4G25660.1 | 21798944 |
| AT5G01640.1 | EES03822 | AT5G01640.1 | 21798944 |
| AT5G01640.1 | EES15518 | AT5G01640.1 | 21798944 |
| AT5G01640.1 | KXG22202 | AT5G01640.1 | 21798944 |
| AT5G01640.1 | KXG38626 | AT5G01640.1 | 21798944 |
| AT5G01640.1 | OQU79263 | AT5G01640.1 | 21798944 |
| AT5G01640.1 | OQU82692 | AT5G01640.1 | 21798944 |
| AT5G01640.1 | EES19450 | AT5G12390.1 | 21798944 |
| AT5G01640.1 | OQU92576 | AT5G12390.1 | 21798944 |
| AT5G01640.1 | EER89811 | AT5G41600.1 | 21798944 |
| AT5G01640.1 | EES19841 | AT5G41600.1 | 21798944 |
| AT5G01640.1 | KXG31516 | AT5G41600.1 | 21798944 |
| AT5G01640.1 | KXG33320 | AT5G41600.1 | 21798944 |
| AT5G01640.1 | OQU84758 | AT5G41600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043018_P001 | Maize | mitochondrion | 92.83 | 94.09 |
| Os01t0827400-01 | Rice | extracellular, mitochondrion, plasma membrane | 57.85 | 88.97 |
| HORVU3Hr1G088130.1 | Barley | plastid | 85.65 | 86.82 |
| TraesCS3B01G380000.1 | Wheat | plastid | 82.51 | 86.39 |
| TraesCS3A01G348100.1 | Wheat | plastid | 82.06 | 86.32 |
| TraesCS3D01G341700.1 | Wheat | plastid | 85.2 | 85.97 |
| KXG22202 | Sorghum | plastid | 74.89 | 76.96 |
| HORVU2Hr1G086930.1 | Barley | cytosol, plastid | 35.43 | 70.54 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 58.74 | 60.93 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 58.74 | 60.65 |
| OQU82692 | Sorghum | plastid | 55.61 | 55.36 |
| EES15518 | Sorghum | plastid | 56.5 | 54.08 |
| PGSC0003DMT400034320 | Potato | plastid | 46.64 | 49.06 |
| KRH76033 | Soybean | endoplasmic reticulum | 47.09 | 47.95 |
| CDY07736 | Canola | plastid | 47.53 | 47.75 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 17.94 | 47.62 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 39.46 | 47.57 |
| CDY63156 | Canola | plastid | 46.19 | 47.25 |
| Bra000056.1-P | Field mustard | plastid | 46.64 | 46.85 |
| CDX80758 | Canola | plastid | 44.84 | 46.73 |
| KRH65569 | Soybean | plastid | 47.53 | 46.7 |
| OQU79263 | Sorghum | plastid | 34.08 | 46.06 |
| Solyc10g076360.1.1 | Tomato | plastid | 46.19 | 45.98 |
| AT2G38360.1 | Thale cress | plastid | 45.29 | 45.91 |
| PGSC0003DMT400041063 | Potato | plastid | 46.19 | 45.18 |
| CDY61529 | Canola | plastid | 24.66 | 43.65 |
| KRH49465 | Soybean | plastid | 43.05 | 43.05 |
| KRH00333 | Soybean | plastid | 43.5 | 42.73 |
| AT5G01640.1 | Thale cress | plastid | 42.15 | 42.15 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 21.08 | 39.83 |
| KRH32827 | Soybean | plastid | 39.01 | 38.5 |
| Bra005112.1-P | Field mustard | plastid | 28.7 | 38.1 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 29.6 | 36.26 |
| EES00126 | Sorghum | plastid | 28.7 | 33.33 |
| EER90731 | Sorghum | plastid | 30.49 | 30.36 |
| OQU77594 | Sorghum | plastid | 26.01 | 29.59 |
| EER93477 | Sorghum | plastid | 33.63 | 25.51 |
Protein Annotations
| EnsemblPlants:EES03822 | EnsemblPlantsGene:SORBI_3003G341600 | EntrezGene:8057732 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF12 | PFAM:PF03208 |
| ProteinID:EES03822 | ProteinID:EES03822.1 | RefSeq:XP_002458702.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0001A85868 |
| UniProt:C5XNX0 | MapMan:22.8.4.3.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:66424208..66426939
Molecular Weight (calculated)
23071.7 Da
IEP (calculated)
9.313
GRAVY (calculated)
0.520
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAATPAPL LPVTNPAAGG GGGGSAASSA TGLSDAALAT PAFRLFVSRL SDTARRSLAD RRSWTELLDR SAFSRPDSLS EATSRLRRNL GYFRVNYAAV
101: VAFSLAASLL AHPFSLLVLI GILGAWCFLY VFRAPDQPVV LFGRTFTDRE TLLGLVVASV LAFFLTSVAS LIISGLLVGG AIVAAHGACR VPEDLFLDDP
201: NAASSGNPTS RLISFLASPG SGV
101: VAFSLAASLL AHPFSLLVLI GILGAWCFLY VFRAPDQPVV LFGRTFTDRE TLLGLVVASV LAFFLTSVAS LIISGLLVGG AIVAAHGACR VPEDLFLDDP
201: NAASSGNPTS RLISFLASPG SGV
001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
Arabidopsis Description
PRA1B1PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.