CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013069_P001	Maize	plastid	87.95	87.17
Zm00001d034469_P001	Maize	plastid	87.5	86.34
Os03t0798400-01	Rice	plasma membrane	79.46	77.39
TraesCS5A01G443300.1	Wheat	plastid	79.91	76.82
TraesCS5D01G450800.1	Wheat	plastid	78.12	75.11
TraesCS5B01G447900.1	Wheat	plastid	77.23	74.57
HORVU5Hr1G106520.1	Barley	cytosol	62.5	59.83
GSMUA_Achr7P07600_001	Banana	plastid	42.86	46.38
Bra018602.1-P	Field mustard	plastid	40.62	43.75
CDX93539	Canola	plastid	39.73	42.79
CDX95035	Canola	plastid	39.73	42.79
OQU77594	Sorghum	plastid	36.61	41.84
KRH34097	Soybean	plastid	35.27	41.58
KRG92690	Soybean	plastid	35.27	41.15
EES00126	Sorghum	plastid	35.27	41.15
VIT_14s0081g00090.t01	Wine grape	plastid	35.71	38.84
AT1G08770.1	Thale cress	plastid	35.27	37.8
PGSC0003DMT400050026	Potato	plastid	36.16	37.67
OQU82692	Sorghum	plastid	31.7	31.7
KXG22202	Sorghum	plastid	30.36	31.34
EES15518	Sorghum	plastid	32.14	30.9
EES03822	Sorghum	plastid	30.36	30.49
Solyc01g097230.2.1	Tomato	plastid	20.98	29.19
EER93477	Sorghum	plastid	35.27	26.87
KXG38626	Sorghum	golgi, plasma membrane, plastid	21.88	26.49
OQU79263	Sorghum	plastid	17.41	23.64

Protein Annotations

MapMan:22.8.4.3.2	EntrezGene:8081250	UniProt:C5WX57	EnsemblPlants:EER90731	ProteinID:EER90731	ProteinID:EER90731.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	PFAM:PF03208
PANTHER:PTHR19317	PANTHER:PTHR19317:SF5	InterPro:Prenylated_rab_accept_PRA1	EnsemblPlantsGene:SORBI_3001G055600	TMHMM:TMhelix	UniParc:UPI0001A8210D
RefSeq:XP_002463733.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:4153696..4154370

Molecular Weight (calculated)

23576.2 Da

IEP (calculated)

9.066

GRAVY (calculated)

0.390

Length

224 amino acids

Sequence
(BLAST)

001: MSTSTASWSR YGAVPTSPPA PSPQLRPEDV AAAAGGEAAP SSSAAEAGVA FFSRARAFAG AAAGRPRAWR EVLDPTAFSR PESCGEARAR ARRNLAYFRA
101: NYALAALVLV FLGLVYRPVS MLVFLALFVA WLGLYFGRGD GDPLVCLGRE VDDRVVLAVL SAATVLAVAL TRAGLNLLVS LVVAAAVIGV HAAFRVNFYL
201: DERDAFDVAG NSFTDSAYGY ALPR

Best Arabidopsis Sequence Match ( AT1G08770.1 )
(BLAST)

001: MNQKPPPYGY GGAGGGGVGP SSTSNTTIIG TLSARAKQTT QSMITTLRPW REILDLSALS LPRGYDEAMA HLKHNISYFR GNYALAVLAI VFLGLIYHPM
101: SMIAFIVVFI GWILLYFSRD ANDSIVISGK EVDDKIVLVL LSLVTVLALV YTDVGENVLV SLIIGLLIVG AHGAFRNTDD LFLDEESARR GGLVSAGSGN
201: RPPSSYTPI

Arabidopsis Description

PRA1EPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178W4Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.