CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

plastid 3
mitochondrion 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER89811
EER93195
EES03822
EES15518
EES19450
EES19652
EES19841
KXG22202
KXG31516
KXG33320
KXG38626
OQU79263
OQU82692
OQU84758
OQU88745
OQU92576

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	EER93195	AT3G46060.1	21798944
AT2G38360.1	EES19652	AT3G46060.1	21798944
AT2G38360.1	OQU88745	AT3G46060.1	21798944
AT5G01640.1	EER87703	AT4G25660.1	21798944
AT5G01640.1	EES03822	AT5G01640.1	21798944
AT5G01640.1	EES15518	AT5G01640.1	21798944
AT5G01640.1	KXG22202	AT5G01640.1	21798944
AT5G01640.1	KXG38626	AT5G01640.1	21798944
AT5G01640.1	OQU79263	AT5G01640.1	21798944
AT5G01640.1	OQU82692	AT5G01640.1	21798944
AT5G01640.1	EES19450	AT5G12390.1	21798944
AT5G01640.1	OQU92576	AT5G12390.1	21798944
AT5G01640.1	EER89811	AT5G41600.1	21798944
AT5G01640.1	EES19841	AT5G41600.1	21798944
AT5G01640.1	KXG31516	AT5G41600.1	21798944
AT5G01640.1	KXG33320	AT5G41600.1	21798944
AT5G01640.1	OQU84758	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82692	Sorghum	plastid	68.65	56.7
EES15518	Sorghum	plastid	68.11	54.08
Os11t0107600-01	Rice	plastid	60.0	50.45
Os12t0107600-00	Rice	plastid	59.46	50.0
HORVU4Hr1G024530.1	Barley	plastid	60.0	49.12
TraesCS4D01G132000.1	Wheat	plastid	60.0	48.9
TraesCS4A01G180500.1	Wheat	plastid	59.46	48.25
Zm00001d052322_P001	Maize	plastid	49.19	48.15
TraesCS4B01G137300.1	Wheat	plastid	58.92	48.02
TraesCS5D01G156800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	56.76	46.46
TraesCS5A01G151600.1	Wheat	plastid	56.22	46.02
TraesCS5B01G150200.1	Wheat	plastid	55.14	45.13
HORVU5Hr1G047520.1	Barley	endoplasmic reticulum, plastid	56.22	42.98
AT4G00005.1	Thale cress	extracellular, plasma membrane	27.03	42.37
GSMUA_Achr3P10010_001	Banana	plastid	48.65	41.67
GSMUA_Achr5P07440_001	Banana	plastid	48.11	41.4
Bra005112.1-P	Field mustard	plastid	37.3	41.07
KXG22202	Sorghum	plastid	47.03	40.09
EES03822	Sorghum	plastid	47.57	39.46
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	36.76	37.36
KRH76033	Soybean	endoplasmic reticulum	42.16	35.62
KRG93818	Soybean	extracellular, plasma membrane, vacuole	15.68	34.52
KRH65569	Soybean	plastid	42.16	34.36
CDY63156	Canola	plastid	40.0	33.95
CDX80758	Canola	plastid	38.92	33.64
Bra000056.1-P	Field mustard	plastid	40.0	33.33
CDY07736	Canola	plastid	40.0	33.33
PGSC0003DMT400034320	Potato	plastid	37.84	33.02
AT2G38360.1	Thale cress	plastid	38.38	32.27
AT5G01640.1	Thale cress	plastid	37.84	31.39
Solyc10g076360.1.1	Tomato	plastid	37.84	31.25
KRH00333	Soybean	plastid	37.84	30.84
PGSC0003DMT400041063	Potato	plastid	37.84	30.7
KRH49465	Soybean	plastid	36.22	30.04
OQU79263	Sorghum	plastid	25.95	29.09
KRH32827	Soybean	plastid	32.43	26.55
EES00126	Sorghum	plastid	25.41	24.48
CDY61529	Canola	plastid	15.68	23.02
OQU77594	Sorghum	plastid	23.24	21.94
EER90731	Sorghum	plastid	26.49	21.88
EER93477	Sorghum	plastid	30.81	19.39

Protein Annotations

EnsemblPlants:KXG38626	EnsemblPlantsGene:SORBI_3001G259500	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF35	PFAM:PF03208	ProteinID:KXG38626
ProteinID:KXG38626.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00081AE06E	UniProt:A0A1B6QL39	MapMan:22.8.4.3.2

Description

hypothetical protein

Coordinates

chr1:+:31240872..31241636

Molecular Weight (calculated)

19396.9 Da

IEP (calculated)

9.202

GRAVY (calculated)

0.701

Length

185 amino acids

Sequence
(BLAST)

001: MNRSRQKRGA RTAKTLLISL LRSPAATLRL LALQATSRLW KNLVYFRVNY AAVTALCLAA SLLAHPFSLA MLLAAWCLLY ELRPADAPPV AAFCRTFSDR
101: EVLGGLVAAS AFVVFLTSVG SLIFSALALG AAVVCAHGAC RVPEDLFLDE ADQAAGGARN PLLCACATTA VALCSARIYG VPAAG

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.