Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- peroxisome 1
- vacuole 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82692 | Sorghum | plastid | 90.48 | 76.34 |
| EES15518 | Sorghum | plastid | 91.01 | 73.82 |
| Os11t0107600-01 | Rice | plastid | 75.66 | 65.0 |
| Os12t0107600-00 | Rice | plastid | 72.49 | 62.27 |
| TraesCS4D01G132000.1 | Wheat | plastid | 69.84 | 58.15 |
| HORVU4Hr1G024530.1 | Barley | plastid | 69.31 | 57.96 |
| TraesCS4A01G180500.1 | Wheat | plastid | 69.84 | 57.89 |
| TraesCS4B01G137300.1 | Wheat | plastid | 69.31 | 57.71 |
| TraesCS5B01G150200.1 | Wheat | plastid | 65.08 | 54.42 |
| TraesCS5D01G156800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 64.02 | 53.54 |
| TraesCS5A01G151600.1 | Wheat | plastid | 64.02 | 53.54 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 48.15 | 49.19 |
| Zm00001d043018_P001 | Maize | mitochondrion | 56.61 | 48.64 |
| HORVU5Hr1G047520.1 | Barley | endoplasmic reticulum, plastid | 61.38 | 47.93 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 54.5 | 47.69 |
| Zm00001d010603_P002 | Maize | mitochondrion | 54.5 | 47.47 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 53.97 | 47.44 |
| KRH76033 | Soybean | endoplasmic reticulum | 50.26 | 43.38 |
| Bra000056.1-P | Field mustard | plastid | 50.79 | 43.24 |
| CDY07736 | Canola | plastid | 50.26 | 42.79 |
| CDY63156 | Canola | plastid | 49.21 | 42.66 |
| KRH65569 | Soybean | plastid | 50.79 | 42.29 |
| AT2G38360.1 | Thale cress | plastid | 47.62 | 40.91 |
| Solyc10g076360.1.1 | Tomato | plastid | 47.62 | 40.18 |
| CDY61529 | Canola | plastid | 26.45 | 39.68 |
| CDX80758 | Canola | plastid | 44.44 | 39.25 |
| PGSC0003DMT400041063 | Potato | plastid | 46.56 | 38.6 |
| PGSC0003DMT400034320 | Potato | plastid | 42.86 | 38.21 |
| AT5G01640.1 | Thale cress | plastid | 42.86 | 36.32 |
| KRH00333 | Soybean | plastid | 42.86 | 35.68 |
| KRH49465 | Soybean | plastid | 40.74 | 34.53 |
| KRH32827 | Soybean | plastid | 38.62 | 32.3 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 14.29 | 32.14 |
| Bra005112.1-P | Field mustard | plastid | 28.57 | 32.14 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 29.63 | 30.77 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 17.99 | 28.81 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 26.98 | 26.42 |
| Zm00001d034469_P001 | Maize | plastid | 31.22 | 25.99 |
| Zm00001d013069_P001 | Maize | plastid | 30.69 | 25.66 |
| Zm00001d037747_P001 | Maize | plastid | 25.4 | 25.53 |
| Zm00001d013306_P001 | Maize | plastid | 32.8 | 22.71 |
| Zm00001d033966_P001 | Maize | plastid | 32.28 | 20.89 |
Protein Annotations
| EnsemblPlants:Zm00001d052322_P001 | EnsemblPlants:Zm00001d052322_T001 | EnsemblPlantsGene:Zm00001d052322 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF35 | PFAM:PF03208 | ProteinID:AQK56943.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000842C287 | UniProt:A0A1D6QG97 | MapMan:22.8.4.3.2 | : | : |
Description
Prenylated Rab receptor 2
Coordinates
chr4:+:187094618..187095187
Molecular Weight (calculated)
19175.0 Da
IEP (calculated)
8.052
GRAVY (calculated)
0.452
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASPPLLP TTVVPAAAAP PTPAPTAISS ADATDTNPAA IRAFLSRLLD TTRRALSGAR PWSELADRSA LSRPESLAEA TSRLRKNLAY FRVNYAAVAA
101: LCLAAALLGR TFSDREVLGG LAAASAFVVF LTSVGSLIFS ALALGTAIVC AHGACRVPED LFLDDVDQAA GGTGNPLLSL IASATGGRV
101: LCLAAALLGR TFSDREVLGG LAAASAFVVF LTSVGSLIFS ALALGTAIVC AHGACRVPED LFLDDVDQAA GGTGNPLLSL IASATGGRV
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.