Factsheet for Zm00001d010603_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008982_P001
Zm00001d009978_P001
Zm00001d010538_P005
Zm00001d010603_P002
Zm00001d012776_P001
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020729_P001
Zm00001d034638_P001
Zm00001d037453_P001
Zm00001d038380_P001
Zm00001d038768_P001
Zm00001d039316_P001
Zm00001d043018_P001
Zm00001d043551_P003
Zm00001d045580_P001
Zm00001d047461_P001
Zm00001d052322_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	Zm00001d010538_P005	AT3G46060.1	21798944
AT2G38360.1	Zm00001d034638_P001	AT3G46060.1	21798944
AT2G38360.1	Zm00001d038380_P001	AT3G46060.1	21798944
AT5G01640.1	Zm00001d045580_P001	AT4G25660.1	21798944
AT5G01640.1	Zm00001d010603_P002	AT5G01640.1	21798944
AT5G01640.1	Zm00001d043018_P001	AT5G01640.1	21798944
AT5G01640.1	Zm00001d052322_P001	AT5G01640.1	21798944
AT5G01640.1	Zm00001d009978_P001	AT5G12390.1	21798944
AT5G01640.1	Zm00001d047461_P001	AT5G12390.1	21798944
AT5G01640.1	Zm00001d008982_P001	AT5G41600.1	21798944
AT5G01640.1	Zm00001d012776_P001	AT5G41600.1	21798944
AT5G01640.1	Zm00001d016041_P001	AT5G41600.1	21798944
AT5G01640.1	Zm00001d020229_P001	AT5G41600.1	21798944
AT5G01640.1	Zm00001d020729_P001	AT5G41600.1	21798944
AT5G01640.1	Zm00001d037453_P001	AT5G41600.1	21798944
AT5G01640.1	Zm00001d038768_P001	AT5G41600.1	21798944
AT5G01640.1	Zm00001d039316_P001	AT5G41600.1	21798944
AT5G01640.1	Zm00001d043551_P003	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22202	Sorghum	plastid	94.93	94.93
Os05t0474400-01	Rice	plasma membrane, vacuole	88.02	86.82
TraesCS1B01G307400.1	Wheat	golgi, unclear	82.95	81.82
TraesCS1D01G293300.1	Wheat	plastid	82.95	81.45
TraesCS1A01G297900.1	Wheat	plastid	82.95	81.45
HORVU1Hr1G070360.1	Barley	plastid	82.95	81.08
Zm00001d043018_P001	Maize	mitochondrion	73.73	72.73
GSMUA_Achr3P10010_001	Banana	plastid	62.21	62.5
GSMUA_Achr5P07440_001	Banana	plastid	61.75	62.33
KRG93818	Soybean	extracellular, plasma membrane, vacuole	21.2	54.76
Zm00001d052322_P001	Maize	plastid	47.47	54.5
CDY63156	Canola	plastid	54.38	54.13
CDY07736	Canola	plastid	55.3	54.05
Bra000056.1-P	Field mustard	plastid	55.3	54.05
AT2G38360.1	Thale cress	plastid	53.92	53.18
KRH76033	Soybean	endoplasmic reticulum	53.0	52.51
CDX80758	Canola	plastid	51.15	51.87
KRH49465	Soybean	plastid	52.07	50.67
PGSC0003DMT400034320	Potato	plastid	49.31	50.47
KRH65569	Soybean	plastid	52.53	50.22
AT5G01640.1	Thale cress	plastid	50.69	49.33
KRH00333	Soybean	plastid	51.15	48.9
Solyc10g076360.1.1	Tomato	plastid	50.23	48.66
PGSC0003DMT400041063	Potato	plastid	50.23	47.81
CDY61529	Canola	plastid	27.65	47.62
Bra005112.1-P	Field mustard	plastid	35.48	45.83
AT4G00005.1	Thale cress	extracellular, plasma membrane	24.88	45.76
KRH32827	Soybean	plastid	44.7	42.92
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	35.94	42.86
Zm00001d039455_P002	Maize	extracellular, mitochondrion	32.26	36.27
Zm00001d037747_P001	Maize	plastid	29.95	34.57
Zm00001d013069_P001	Maize	plastid	32.72	31.42
Zm00001d034469_P001	Maize	plastid	31.34	29.96
Zm00001d013306_P001	Maize	plastid	37.33	29.67
Zm00001d033966_P001	Maize	plastid	37.79	28.08

Protein Annotations

EMBL:BT034862	EMBL:EU962370	EnsemblPlants:Zm00001d010603_P002	EnsemblPlants:Zm00001d010603_T002	EnsemblPlantsGene:Zm00001d010603	EntrezGene:100192789
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF12
PFAM:PF03208	ProteinID:AQK94434.1	ProteinID:AQK94435.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00017B674A
UniProt:B4FCM4	MapMan:22.8.4.3.2	:	:	:	:

Description

PRA1 family protein B4

Coordinates

chr8:+:121650264..121651522

Molecular Weight (calculated)

22658.4 Da

IEP (calculated)

9.203

GRAVY (calculated)

0.458

Length

217 amino acids

Sequence
(BLAST)

001: MASAPTPPPL LPVTNPASGS SPAAAGGSDA PIATPAFRLF LSRISDSARR SLSDRRPWGE LLDRSAFSKP DSLSDATSRL RRNLAYFRVN YAAVVAFALG
101: ASLLAHPFSL LILLGLLAAW CFLYLFRPSD QPVVLFGRTF SDRETLLGLV GASFILLFFT SVASLIISGL LVGGALVAAH GAFRVPEDLF LDEPNAPPGS
201: SAAQGLLSFL GGPGSGV

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.