Factsheet for TraesCS1B01G307400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 4
peroxisome 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G239800.1
TraesCS1A01G286200.1
TraesCS1A01G297900.1
TraesCS1A01G346800.3
TraesCS1B01G252000.1
TraesCS1B01G295600.1
TraesCS1B01G307400.1
TraesCS1B01G360800.1
TraesCS1D01G240000.1
TraesCS1D01G285200.1
TraesCS1D01G293300.1
TraesCS1D01G349700.1
TraesCS3A01G151200.1
TraesCS3A01G278800.1
TraesCS3A01G348100.1
TraesCS3A01G356000.3
TraesCS3B01G178100.1
TraesCS3B01G313000.1
TraesCS3B01G380000.1
TraesCS3B01G388900.1
TraesCS3D01G159100.1
TraesCS3D01G279100.1
TraesCS3D01G341700.1
TraesCS3D01G350000.3
TraesCS4A01G023200.1
TraesCS4A01G180500.1
TraesCS4B01G137300.1
TraesCS4B01G280300.1
TraesCS4D01G132000.1
TraesCS4D01G278800.1
TraesCS5A01G151600.1
TraesCS5A01G476400.1
TraesCS5B01G150200.1
TraesCS5B01G489300.1
TraesCS5D01G156800.1
TraesCS5D01G489700.1
TraesCS7A01G019000.1
TraesCS7A01G341800.1
TraesCS7B01G241100.1
TraesCS7D01G016100.1
TraesCS7D01G337800.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	TraesCS1A01G286200.1	AT3G46060.1	21798944
AT2G38360.1	TraesCS1B01G295600.1	AT3G46060.1	21798944
AT2G38360.1	TraesCS1D01G285200.1	AT3G46060.1	21798944
AT2G38360.1	TraesCS3A01G356000.3	AT3G46060.1	21798944
AT2G38360.1	TraesCS3B01G388900.1	AT3G46060.1	21798944
AT2G38360.1	TraesCS3D01G350000.3	AT3G46060.1	21798944
AT2G38360.1	TraesCS5A01G476400.1	AT3G46060.1	21798944
AT2G38360.1	TraesCS5B01G489300.1	AT3G46060.1	21798944
AT2G38360.1	TraesCS5D01G489700.1	AT3G46060.1	21798944
AT5G01640.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT5G01640.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT5G01640.1	TraesCSU01G065800.1	AT4G25660.1	21798944
AT5G01640.1	TraesCS1A01G297900.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS1B01G307400.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS1D01G293300.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS3A01G348100.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS3B01G380000.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS3D01G341700.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS4A01G180500.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS4B01G137300.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS4D01G132000.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS5A01G151600.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS5B01G150200.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS5D01G156800.1	AT5G01640.1	21798944
AT5G01640.1	TraesCS1A01G239800.1	AT5G12390.1	21798944
AT5G01640.1	TraesCS1B01G252000.1	AT5G12390.1	21798944
AT5G01640.1	TraesCS1D01G240000.1	AT5G12390.1	21798944
AT5G01640.1	TraesCS4A01G023200.1	AT5G12390.1	21798944
AT5G01640.1	TraesCS4B01G280300.1	AT5G12390.1	21798944
AT5G01640.1	TraesCS4D01G278800.1	AT5G12390.1	21798944
AT5G01640.1	TraesCS1A01G346800.3	AT5G41600.1	21798944
AT5G01640.1	TraesCS1B01G360800.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS1D01G349700.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS3A01G151200.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS3A01G278800.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS3B01G178100.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS3B01G313000.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS3D01G159100.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS3D01G279100.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS7A01G341800.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS7B01G241100.1	AT5G41600.1	21798944
AT5G01640.1	TraesCS7D01G337800.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G293300.1	Wheat	plastid	99.09	98.64
TraesCS1A01G297900.1	Wheat	plastid	98.64	98.19
HORVU1Hr1G070360.1	Barley	plastid	98.18	97.3
Os05t0474400-01	Rice	plasma membrane, vacuole	87.27	87.27
KXG22202	Sorghum	plastid	83.18	84.33
Zm00001d010603_P002	Maize	mitochondrion	81.82	82.95
TraesCS3B01G380000.1	Wheat	plastid	71.82	74.18
GSMUA_Achr5P07440_001	Banana	plastid	58.18	59.53
GSMUA_Achr3P10010_001	Banana	plastid	57.73	58.8
TraesCS4B01G137300.1	Wheat	plastid	55.45	53.74
CDY63156	Canola	plastid	50.91	51.38
AT2G38360.1	Thale cress	plastid	50.91	50.91
CDY07736	Canola	plastid	51.36	50.9
Bra000056.1-P	Field mustard	plastid	51.36	50.9
TraesCS5B01G150200.1	Wheat	plastid	52.27	50.88
KRG93818	Soybean	extracellular, plasma membrane, vacuole	19.09	50.0
KRH76033	Soybean	endoplasmic reticulum	49.55	49.77
CDX80758	Canola	plastid	48.18	49.53
PGSC0003DMT400034320	Potato	plastid	46.36	48.11
Solyc10g076360.1.1	Tomato	plastid	48.64	47.77
PGSC0003DMT400041063	Potato	plastid	48.64	46.93
KRH65569	Soybean	plastid	48.18	46.7
KRH49465	Soybean	plastid	46.82	46.19
AT5G01640.1	Thale cress	plastid	45.91	45.29
CDY61529	Canola	plastid	25.0	43.65
AT4G00005.1	Thale cress	extracellular, plasma membrane	23.18	43.22
KRH00333	Soybean	plastid	44.55	43.17
Bra005112.1-P	Field mustard	plastid	31.82	41.67
KRH32827	Soybean	plastid	41.36	40.27
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	32.27	39.01
TraesCS5B01G385000.1	Wheat	extracellular, plasma membrane	24.09	37.06
TraesCS3B01G122600.1	Wheat	plastid	26.36	30.53
TraesCS1B01G143000.1	Wheat	plastid	26.36	30.21
TraesCS5B01G447900.1	Wheat	plastid	27.27	25.86

Protein Annotations

EnsemblPlants:TraesCS1B01G307400.1	EnsemblPlantsGene:TraesCS1B01G307400	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF12	PFAM:PF03208
SEG:seg	TMHMM:TMhelix	MapMan:22.8.4.3.2	:	:	:

Description

No Description!

Coordinates

chr1B:+:530463271..530464314

Molecular Weight (calculated)

23095.9 Da

IEP (calculated)

9.219

GRAVY (calculated)

0.455

Length

220 amino acids

Sequence
(BLAST)

001: MASAPTQPPL LPVTNPTAAG SAPASGGGGG LDAPIATPAF RLFMSRISES ARRSLSDRRP WAEMVDRSAF SRPDSLSDAT SRLRRNLTYF RVNYTAVVAF
101: ALAASLLAHP FSLLILLGVL AAWCFLYIFR ASDQPVALFG RTFSDRETLL GLVVASIVAF FFTPVASLII SGMLVGGAIV AAHGAFRMPE DLFLDDADAA
201: SGNSAAQGLL SFLGAPGSRV

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.