Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 97.69 | 97.69 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 97.69 | 97.69 |
| HORVU7Hr1G081290.4 | Barley | plastid | 80.77 | 90.91 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 96.92 | 84.0 |
| Os06t0503400-01 | Rice | plasma membrane | 82.69 | 81.13 |
| EER89811 | Sorghum | peroxisome | 77.31 | 78.52 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 77.31 | 77.01 |
| Solyc03g007740.2.1 | Tomato | nucleus | 51.15 | 52.16 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 50.0 | 51.59 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 50.38 | 51.57 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 49.62 | 51.19 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 49.62 | 50.99 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 50.0 | 50.98 |
| Solyc01g095200.2.1 | Tomato | plastid | 51.54 | 50.95 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 49.23 | 50.59 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 49.62 | 50.59 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 51.54 | 50.57 |
| KRH59988 | Soybean | mitochondrion | 49.23 | 50.39 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 48.46 | 50.2 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 51.92 | 50.0 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 48.08 | 49.8 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 48.08 | 49.8 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 30.77 | 49.69 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 51.54 | 49.63 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 47.69 | 49.6 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 16.54 | 49.43 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 47.69 | 49.4 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 47.69 | 49.4 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 47.31 | 49.2 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 46.54 | 48.79 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 47.69 | 48.63 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 46.92 | 48.61 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 46.54 | 48.4 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 49.23 | 47.94 |
| KRH40357 | Soybean | endoplasmic reticulum | 47.31 | 47.86 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 45.38 | 47.58 |
| Bra000739.1-P | Field mustard | cytosol | 48.85 | 47.57 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 48.08 | 47.53 |
| AT4G11220.1 | Thale cress | nucleus | 49.23 | 47.23 |
| KRH00872 | Soybean | endoplasmic reticulum | 46.92 | 47.1 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 46.54 | 47.08 |
| Bra019285.1-P | Field mustard | cytosol | 48.46 | 47.01 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 49.62 | 46.91 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 45.0 | 46.8 |
| Bra013717.1-P | Field mustard | nucleus | 49.62 | 46.74 |
| CDY10954 | Canola | cytosol | 48.46 | 46.67 |
| Bra010539.1-P | Field mustard | cytosol | 48.08 | 46.47 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 45.38 | 46.46 |
| AT4G23630.2 | Thale cress | nucleus | 48.85 | 46.18 |
| KRH06560 | Soybean | endoplasmic reticulum | 45.38 | 46.09 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 48.85 | 46.01 |
| CDY24806 | Canola | cytosol | 48.46 | 45.99 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 44.62 | 45.49 |
| CDY41666 | Canola | cytosol | 48.08 | 45.29 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 44.23 | 45.28 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 44.23 | 45.28 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 44.23 | 45.28 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 43.46 | 44.66 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 46.15 | 44.28 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 46.92 | 42.66 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 40.38 | 42.0 |
| CDY05135 | Canola | mitochondrion | 48.08 | 39.94 |
| Bra037369.1-P | Field mustard | cytosol | 37.31 | 39.92 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 37.31 | 39.92 |
| CDY48510 | Canola | cytosol | 37.31 | 39.92 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 48.08 | 39.81 |
| AT4G01230.2 | Thale cress | cytosol | 35.77 | 38.11 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 34.62 | 36.44 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 35.77 | 35.91 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 31.92 | 35.47 |
| TraesCS1D01G083100.2 | Wheat | mitochondrion | 38.46 | 34.6 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 23.85 | 34.44 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 29.62 | 33.92 |
| CDY62522 | Canola | cytosol | 10.38 | 33.75 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 7.69 | 33.33 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 30.0 | 33.33 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 25.38 | 33.33 |
| Bra035242.1-P | Field mustard | cytosol | 25.38 | 33.0 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 30.0 | 31.84 |
| KRG91601 | Soybean | mitochondrion | 40.0 | 30.59 |
| CDX89122 | Canola | extracellular, mitochondrion | 17.31 | 29.41 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G337800.1 | EnsemblPlantsGene:TraesCS7D01G337800 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF73 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr7D:+:431248144..431253255
Molecular Weight (calculated)
28194.6 Da
IEP (calculated)
7.692
GRAVY (calculated)
0.147
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPAEETVA APPPTPAVPA EGAPPLSAEP PASTDASPEK AAPPAPAPDT TVRSRGFRLL GEDTSVHKVL GGGKTADVLL WKDKKTTAVV IGGTTVIWVL
101: FEVLDYHLLT LLSHVMIGVL AILFVWSKAM TFIKKSPPDI PVVEMPEDLA LNVSRALRND VNRSLHLLRE IAMGHDLKKF LGVIAGLWVL SEVGSCCDFL
201: TLIYIAVLMI HTVPILYDKY QDKVDHFAGK AHTEACKHYQ VLDQKVLSKI PRGLAKTKKT
101: FEVLDYHLLT LLSHVMIGVL AILFVWSKAM TFIKKSPPDI PVVEMPEDLA LNVSRALRND VNRSLHLLRE IAMGHDLKKF LGVIAGLWVL SEVGSCCDFL
201: TLIYIAVLMI HTVPILYDKY QDKVDHFAGK AHTEACKHYQ VLDQKVLSKI PRGLAKTKKT
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.