Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 97.68 | 97.68 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.07 | 97.32 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 92.28 | 91.57 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 77.61 | 81.05 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 76.83 | 80.57 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 75.29 | 78.95 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 62.55 | 65.59 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 57.92 | 60.48 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 55.6 | 58.78 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 55.98 | 58.47 |
| KRH73588 | Soybean | plasma membrane | 53.67 | 56.73 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 52.51 | 55.97 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 52.12 | 55.79 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 54.44 | 55.51 |
| Solyc12g006290.1.1 | Tomato | nucleus | 49.03 | 54.51 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 28.57 | 52.11 |
| KRG99024 | Soybean | plasma membrane | 52.9 | 51.89 |
| Bra029827.1-P | Field mustard | plasma membrane | 47.1 | 51.05 |
| CDY08616 | Canola | plasma membrane | 47.1 | 51.05 |
| CDY00916 | Canola | plasma membrane | 47.1 | 51.05 |
| AT3G10260.3 | Thale cress | plasma membrane | 48.65 | 47.19 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 51.74 | 44.67 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 38.61 | 40.32 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 38.61 | 40.32 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 35.14 | 36.69 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 40.15 | 36.36 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 35.91 | 35.77 |
| CDY56712 | Canola | mitochondrion | 47.49 | 34.65 |
| TraesCS1D01G083100.2 | Wheat | mitochondrion | 37.45 | 33.56 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 29.73 | 32.91 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 28.19 | 31.2 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 22.78 | 29.8 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 23.94 | 27.31 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G426200.1 | EnsemblPlantsGene:TraesCS5D01G426200 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF62 |
| PFAM:PF02453 | PFscan:PS50845 | TMHMM:TMhelix | MapMan:13.7.2.1 | : | : |
Description
No Description!
Coordinates
chr5D:-:484578028..484579260
Molecular Weight (calculated)
29217.5 Da
IEP (calculated)
9.535
GRAVY (calculated)
0.049
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEHSESKAE KLMGNIMDTI ADRLPKQKSD NIMSNIMDTI SDKLPKQRSG RFDPGSVADV KNKMFGRQRS LHGVLGGGKS ADVLLWRNKK ISSSVLGLAT
101: AIWVFFEWLD YHFLTIISFA LVIGMVVQFV WSNFSRSSEI PRVKLPEDLF VNIAVAIGAQ VNKFLGFLQD VSCERNLKHF VLAIVGLWAA SVAGSWFNFL
201: TVIYIGFVCA HTLPVLYEKY EDQVDDFLYS ILGLLREQYQ KLDSGVLSRI PSKRNKKSE
101: AIWVFFEWLD YHFLTIISFA LVIGMVVQFV WSNFSRSSEI PRVKLPEDLF VNIAVAIGAQ VNKFLGFLQD VSCERNLKHF VLAIVGLWAA SVAGSWFNFL
201: TVIYIGFVCA HTLPVLYEKY EDQVDDFLYS ILGLLREQYQ KLDSGVLSRI PSKRNKKSE
001: MKSTFICKLS NLRFRLCFRI MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.