Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029827.1-P | Field mustard | plasma membrane | 100.0 | 100.0 |
| CDY00916 | Canola | plasma membrane | 97.49 | 97.49 |
| AT3G10260.3 | Thale cress | plasma membrane | 85.77 | 76.78 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 64.44 | 62.1 |
| Solyc12g006290.1.1 | Tomato | nucleus | 58.16 | 59.66 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 35.15 | 59.15 |
| CDY56712 | Canola | mitochondrion | 86.19 | 58.03 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 58.16 | 56.73 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 58.58 | 56.45 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 56.9 | 55.97 |
| KRH73588 | Soybean | plasma membrane | 57.32 | 55.92 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 58.58 | 55.12 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 54.39 | 52.42 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 52.3 | 51.65 |
| KRG99024 | Soybean | plasma membrane | 56.07 | 50.76 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 52.3 | 50.4 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 51.46 | 49.8 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 51.05 | 49.39 |
| Os07t0142000-01 | Rice | plasma membrane | 49.79 | 48.37 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 49.79 | 48.18 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 51.46 | 47.49 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 59.41 | 47.33 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 51.05 | 47.1 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 51.05 | 46.74 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 48.12 | 46.56 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 47.7 | 46.15 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 50.21 | 45.98 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 45.19 | 44.44 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 41.0 | 39.04 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 40.59 | 38.65 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 29.71 | 38.17 |
| KXG34376 | Sorghum | plasma membrane | 49.79 | 37.9 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 40.17 | 37.8 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 39.75 | 37.4 |
| CDY67571 | Canola | plasma membrane | 34.31 | 36.61 |
| CDX75962 | Canola | plasma membrane | 34.31 | 36.61 |
| CDY62522 | Canola | cytosol | 12.13 | 36.25 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 33.89 | 36.16 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 24.27 | 36.02 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 35.56 | 34.98 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 36.4 | 34.66 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 35.98 | 34.26 |
| CDY48510 | Canola | cytosol | 34.73 | 34.16 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 35.56 | 34.0 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 35.56 | 34.0 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 37.66 | 33.71 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 38.49 | 33.45 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 38.49 | 33.33 |
| CDY10954 | Canola | cytosol | 37.24 | 32.96 |
| CDY24806 | Canola | cytosol | 36.82 | 32.12 |
| CDY46172 | Canola | plastid | 26.78 | 31.68 |
| CDY41666 | Canola | cytosol | 36.4 | 31.52 |
| CDX82294 | Canola | plastid | 25.1 | 30.61 |
| CDY22970 | Canola | plasma membrane | 25.1 | 30.61 |
| CDX99221 | Canola | plasma membrane | 25.94 | 30.54 |
| CDY22971 | Canola | plasma membrane | 24.69 | 30.1 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 47.7 | 29.77 |
| CDY05135 | Canola | mitochondrion | 37.66 | 28.75 |
| CDY36282 | Canola | plasma membrane | 26.78 | 28.7 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 24.27 | 28.57 |
| CDY51584 | Canola | plasma membrane | 23.85 | 28.08 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 23.85 | 27.8 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 23.85 | 27.8 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 27.62 | 27.62 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 23.43 | 27.59 |
| CDX71213 | Canola | plasma membrane | 23.43 | 27.59 |
| CDX96038 | Canola | plasma membrane | 24.27 | 27.49 |
| CDY08567 | Canola | cytosol | 27.2 | 26.97 |
| CDX81500 | Canola | plasma membrane | 23.43 | 26.92 |
| CDY01898 | Canola | plasma membrane | 23.85 | 26.89 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 26.78 | 26.12 |
| CDX89122 | Canola | extracellular, mitochondrion | 14.23 | 22.22 |
| CDX76854 | Canola | plasma membrane | 17.99 | 20.77 |
| CDY46067 | Canola | plasma membrane | 17.99 | 20.67 |
| CDY12701 | Canola | plasma membrane | 23.01 | 18.21 |
Protein Annotations
| EnsemblPlants:CDY08616 | EnsemblPlantsGene:GSBRNA2T00000411001 | GO:A0A078F5F8 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF62 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDY08616 |
| ProteinID:CDY08616.1 | TMHMM:TMhelix | UniParc:UPI000254795E | UniProt:A0A078F5F8 | MapMan:13.7.2.1 | : |
Description
BnaA05g28520DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5F8]
Coordinates
chrLK031986:+:948201..949770
Molecular Weight (calculated)
26971.0 Da
IEP (calculated)
8.730
GRAVY (calculated)
0.193
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEKNIVEEA IGDLVDNFTD AVQKNKHDTV ASRFNRLFGR EKPIHHVLGG GRSADVLLWR NKKISASFLM GATAIWVLFE WINLHFLSLV CYGLLLGMIA
101: QFVWCNASGF LNRSQSRVPR LVLPKDFFAD VGVTIGTEVN RGLLFLQDLS CRGNLKQFLM AVFGLWITAI IGSCCNFLTV LYIGFVGAHT MPVVYERYED
201: EVDGFVDSLL MKFHSHYKKI DSGFLSRIPS GKFGMKKHD
101: QFVWCNASGF LNRSQSRVPR LVLPKDFFAD VGVTIGTEVN RGLLFLQDLS CRGNLKQFLM AVFGLWITAI IGSCCNFLTV LYIGFVGAHT MPVVYERYED
201: EVDGFVDSLL MKFHSHYKKI DSGFLSRIPS GKFGMKKHD
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.